Published August 19, 2022
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Molecular genetics of Simulium (Wilhelmia) equinum (Linnaeus) (Diptera: Simuliidae) from West Siberia
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- 1. Institute of Systematics and Ecology of Animals, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia & Federal Research Center Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia oleg.v.vaulin@mail.ru; https://orcid.org/0000-0003-0906-3625
- 2. Institute of Systematics and Ecology of Animals, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia & lusiapetr@yandex.ru; https://orcid.org/0000-0001-6201-0368
- 3. Institute of Systematics and Ecology of Animals, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia & tanovg@yandex.ru; https://orcid.org/0000-0002-2795-108X
Description
Vaulin, Oleg V., Petrozhitskaya, Liudmila V., Novgorodova, Tatiana A. (2022): Molecular genetics of Simulium (Wilhelmia) equinum (Linnaeus) (Diptera: Simuliidae) from West Siberia. Zootaxa 5175 (5): 548-558, DOI: 10.11646/zootaxa.5175.5.4
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References
- Adler, P.H. (2020) World Blackflies (Diptera: Simuliidae): a comprehensive revision of the taxonomic and geographical inventory. Clemson University, Clemson, South Carolina, 142 pp.
- Adler, P.H & McCreadie, J.W. (2019) Black Flies (Simuliidae). In: Mullen, G. & Durden, L. (Eds.), Medical and Veterinary Entomology. 3rd Edition. Academic Press, Boston, Massachusetts and Elsevier, Amsterdampp, pp. 23-259.
- Adler, P.H., Cheke R. & Post R.J. (2010) Evolution, epidemiology and population genetics of black flies (Diptera: Simuliidae). Infection, Genetics and Evolution, 10 (7), 846-865. https://doi.org/10.1016/j.meegid.2010.07.003
- Adler, P.H., Inci, A., Yildirim, A., Duzlu, O., McCreadie, J.W., Kudela, M., Khazeni, A., Bruderova, T., Seitz, G., Takaoka, H., Otsuka, Y. & Bass, J. (2014) Are black flies of the subgenus Wilhelmia (Diptera: Simuliidae) multiple species or a single geographical generalist? Biological Journal of the Linnean Society, 114 (1), 16-183. https://doi.org/10.1111/bij.12403
- Alburaki, M., Moulin, S., Legout, H., Alburaki, A. & Garnery, L. (2011) Mitochondrial structure of Eastern honeybee populations from Syria, Lebanon and Iraq. Apidologie, 42, 628-641. https://doi.org/10.1007/s13592-011-0062-4
- Bender, W., Spierer, P., Hognes, D.S. & Chambon, P. (1983) Chromosomal walking and jumping to isolate DNA from Ace and rosy loci and the bithorax complex in Drosophila melanogaster. Journal of Molecular Biology, 168 (1), 17-33. https://doi.org/10.1016/s0022-2836(83)80320-9
- Bernasconi, C., Pamilo, P. & Cherix, D. (2010) Molecular markers allow sibling species identification in red wood ants (Formica rufa group). Systematic Entomology, 35, 243-249. https://doi.org/10.1111/j.1365-3113.2009.00503.x
- Bernotiene, R. & Stuntenas, V. (2009) On the biology of Simulium galeratum in Lithuania: ecological and molecular data. Ekolologija, 55 (2), 123-126. https://doi.org/10.2478/v10055-009-0015-7
- Besansky, N.J., Powell, J.R., Caccone,A., Hamm, D.M., Scott, J.A. & Collins, F.H. (1994) Molecular phylogeny of the Anopheles gambiae complex suggests genetic introgression between principal malaria vectors. Proceedings of the National Academy of Sciences, 91 (15), 6885-6888. https://doi.org/10.1073/pnas.91.15.6885
- Brower, A.V. (1994) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Sciences, 91 (14), 6491-6495. https://doi.org/10.1073/pnas.91.14.6491
- Chubareva, L.A. & Bulli, V.A. (1983) The karyotypic analysis of the black fly Wilhelmia equina bianchii Rubz. (Diptera, Simuliidae) related to its taxonomical status. Cytology, 25 (5), 610-613.
- Chubareva, L.A., Petrova, N.A. & Reva, M.V. (2007) Karyotypic and morphological study of five species of the genus Wilhelmia Enderlein (Diptera, Simuliidae). Entomological Review, 87(9), 1290-1299. https://doi.org/10.1134/S0013873807090187
- Currie, D.C. & Adler, P.H. (2008) Global diversity of black flies (Diptera: Simuliidae) in freshwater. Hydrobiologia, 595, 469-75. https://doi.org/10.1007/s10750-007-9114-1
- Day, J.C., Goodall, T.I. & Post, R.J. (2008) Confirmation of the species status of the blackfly Simulium galeratum in Britain using molecular taxonomy. Medical and Veterinary Entomology, 22, 55-61. https://doi.org/10.1111/j.1365-2915.2008.00719.x
- Duknic, J., Jovanovic, V.M., Popovic, N., Zivic, I., Rakovic, M., Cerba, D. & Paunovic, M. (2019) Phylogeography of Simulium subgenus Wilhelmia (Diptera:Simuliidae)-Insights from Balkan Populations.Journal of Medical Entomology, 56 (4), 967-978. https://doi.org/10.1093/jme/tjz034
- Duknic, J., Jovanovic, V.M., Atlagic, J.C., Andjus, S., Paunovic, M., Zivic, I. & Popovic, N. (2020) Simulium reptans (Linnaeus, 1758) and Simulium reptantoides Carlsson, 1962 from the Balkan Peninsula. ZooKeys, 922, 141-155. https://doi.org/10.3897/zookeys.922.49306
- Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3 (5), 294-299.
- Foster, W.A. & Walker, E.D. (2019) Mosquitoes (Culicidae). In: Mullen, G. & Durden, L. (Eds.), Medical and Veterinary Entomology. 3rd Edition. Academic Press, Boston, Massachusetts and Elsevier, Amsterdam, pp. 261-325.
- Frey, J.E., Guillen, L., Frey, B., Samietz, J., Rull, J. & Aluja, M. (2013) Developing diagnostic SNP panels for the identification of true fruit flies (Diptera: Tephritidae) within the limits of COI-based species delimitation. BMC Evolutionary Biology, 13, 106. https://doi.org/10.1186/1471-2148-13-106
- Goswami, G., Raghavendra, K., Nanda, N., Gakhar, S.K. & Subbarao, S.K. (2005) PCR-RFLP of mitochondrial cytochrome oxidase subunit II and ITS2 of ribosomal DNA: markers for the identification of members of the Anopheles culicifacies complex (Diptera: Culicidae). Acta Tropica, 95 (2), 92-99. https://doi.org/10.1016/j.actatropica.2005.04.018
- Harbach, R.E. (2004) The classification of genus Anopheles (Diptera: Culicidae): a working hypothesis of phylogenetic relationships. Bulletin of Entomological Research, 94 (6), 537-53. https://doi.org/10.1079/ber2004321
- Hebert, P.D., Ratnasingham, S. & de Waard, J.R. (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society B: Biological Sciences, 270 (Supplement 1), 96-99. https://doi.org/10.1098/rsbl.2003.0025
- Hernandez-Triana, L.M. (2007) Recommendations by The Natural History Museum on methods for collecting, preserving, rearing and mailing of simuliid specimens. Available from: http://blackflies.info/content/simuliidae-collecting-protocol (accessed 3 March 2020)
- Inci, A., Yildrim, A., Duzlu, O., Onder, Z., Ciloglu, A., Seitz, G. & Adler, P.H. (2017) Genetic diversity and identification of Palearctic black flies in the subgenus Wilhelmia (Diptera: Simuliidae). Journal of Medical Entomology, 54 (4), 888-894. https://doi.org/10.1093/jme/tjw246
- Ji, Y.J., Zhang, D. & He, L. (2003) Evolutionary conservation and versatility of a new set of primers for amplifying the ribosomal internal transcribed spacer regions in insects and other invertebrates. Molecular Ecology Notes, 3, 581-585. https://doi.org/10.1046/j.1471-8286.2003.00519.x.
- Katz, A.D. (2020) Inferring evolutionary timescales without independent timing information: An assessment of "universal" insect rates to calibrate a Collembola (Hexapoda) molecular clock. Genes, 11 (10), 1172. https://doi.org/10.3390/genes11101172
- Khanzadeh, F., Khaghaninia, S., Maleki-Ravasan, N., Oshaghi, M.A. & Adler, P.H. (2020). Black flies (Diptera: Simuliidae) of the Aras River Basin: Species composition and floral visitation. Acta Tropica, 209 (3), 105536. https://doi.org/10.1016/j.actatropica.2020.105536
- Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120. https://doi.org/10.1007/bf01731581
- Kudela, M., Bruderova, T., Jedlicka, L., Bernotiene, R., Celec, P. & Szemes, T. (2014) The identity and genetic characterization of Simulium reptans (Diptera: Simuliidae) from central and northern Europe. Zootaxa, 3802 (3), 301-17. https://doi.org/10.11646/zootaxa.3802.3.1
- Kudryavtseva, T. Yu., Popov, V.P., Mokrievich, A.N., Pakskina, N.D., Kholin, A.V., Mazepa, A.V., Kulikalova, E.S., Kosilko, S.A., Birkovskaya, Yu.A., Trankvilevsky, D.V., Khramov, M.V. & Dyatlov, I.A. (2019) Epidemic activity of natural tularemia foci in the territory of the Russian Federation in 2018 and forecast of the situation for 2019. Problems of Particularly Dangerous Infections, 1, 32-41. [in Russian] https://doi.org/10.21055/0370-1069-2019-1-32-41
- Lanzaro, G.C. & Lee, Y. (2013) Speciation in Anopheles gambiae-The distribution of genetic polymorphism and patterns of reproductive isolation among natural populations. In: Manguin, S. (Ed.), Anopheles mosquitoes-New Insights into Malaria Vectors. InTech. Publ., Rijeka, pp. 175-196.
- Low, V.L., Takaoka, H., Adler, P.H., Ya'cob, Z., Norma-Rashid, Y., Chen, C.D. & Sofian-Azirun, M. (2015) A multi-locus approach resolves the phylogenetic relationships of the Simulium asakoae and Simulium ceylonicum species groups in Malaysia: evidence for distinct evolutionary lineages. Medical and Veterinary Entomology, 29, 330-337. https://doi.org/10.1111/mve.12120
- Luchitskaya, I.O., Belaya, S.A. & Arbuzov, S.A. (2014) Climate of Novosibirsk and its changes. SB RAS, Novosibirsk, 224 pp.
- Malmqvist, B., Adler, P.H., Kuusela, K., Merritt, R.W. & Wotton, R.S. (2004) Black flies in the boreal biome, key organisms in both terrestrial and aquatic environments: a review. Ecoscience, 11 (2), 187-200. https://doi.org/10.1080/11956860.2004.11682824
- Medvedev, S.G. & Aibulatov, S.V. (2012) The fauna of bloodsucking insects of the "gnus" complex (Diptera) in Leningrad Province and Saint-Petersburg. Parasitology, 46 (5), 350-368. [in Russian]
- Mirzaeva, A.G. & Glushchenko, N.P. (2009) Bloodsucking Diptera in the Forest-Steppe Regions of Novosibirsk Province. Entomological Review, 89 (6), 659-671. https://doi.org/10.1134/S0013873809060049
- Ney, G., Frederick, K. & Schul, J. (2018) A post-Pleistocene calibrated mutation rate from insect museum specimens. PLoS Currents, 2018, 10. https://doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35
- Novikov, Yu. M & Shevchenko, A.I. (2001) Inversion polymorphism and the divergence of two cryptic forms of Anopheles messeae (Diptera, Culicidae) at the level of genomic DNA repeats. Russian Journal of Genetics, 37 (7), 754-763.
- Papadopoulou, A., Anastasiou, I. & Vogler, A.P. (2010) Revisiting the insect mitochondrial molecular clock: The Mid-Aegean Trench Calibration. Molecular Biology and Evolution, 27 (7), 1659-1672. https://doi.org/10.1093/molbev/msq051
- Patrusheva, V.D. (1966) Black flies (Simuliidae). In: Cherepanov, A.I. (Ed.), Biological bases for the control of black flies in the Ob basin. Nauka, Novosibirsk, pp. 53-117. [in Russian].
- Patrusheva, V.D. (1982) Black flies of Siberia and the Far East. Nauka, Novosibirsk, 321 pp. [in Russian]
- Petrozhitskaya, L.V. (2010) Black flies. In: Ravkin, Yu. S. (Ed.), Biodiversity of the Karasuksko-Burlinsky region (West Siberia). Siberian Branch of RAS, Novosibirsk, pp. 155-159. [in Russian]
- Petrozhitskaya, L.V. (2013) Blood-sucking blackflies (Dipetra: Simuliidae). In: Zhimulev, I.F. (Ed.), Ecosystem dynamics in Novosibirsk Academgorodok. Nauka, Novosibirsk, pp. 278-282 [in Russian]
- Petrozhitskaya, L.V. & Rodkina, V.I. (2018) Landscape-zonal distribution of blackflies (Diptera: Simuliidae) in the Ob-Irtysh River basin (Overview). Inland Water Biology, 11, 255-263. https://doi.org/10.1134/S1995082918020177
- Tamura, K. (1992) Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Molecular Biology and Evolution, 9, 678-687. https://doi.org/10.1093/oxfordjournals.molbev.a040752
- Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30, 2725-2729. https://doi.org/10.1093/molbev/mst197
- Saeung, A., Baimai, V., Otsuka, Y., Rattanarithikul, R., Somboon, P., Junkum, A., Tuetun, B., Takaoka, H. & Choochote, W. (2008). Molecular and cytogenetic evidence of three sibling species of the Anopheles barbirostris Form A (Diptera: Culicidae) in Thailand. Parasitology Research, 102 (3), 499-507. https://doi.org/10.1007/s00436-007-0788-0
- Sedaghat, M.M., Linton, Y.M., Oshaghi, M.A., Vatandoost, H. & Harbach R.E. (2003) The Anopheles maculipennis complex (Diptera: Culicidae) in Iran: molecular characterization and recognition of a new species. Bulletin of Entomological Research, 93 (6), 527-35. https://doi.org/10.1079/BER2003272
- Shaikevich, E.V. (2007) PCR-RFLP of the COI gene reliably differentiates Cx. pipiens, Cx. pipiens f. molestus and Cx. torrentium of the Pipiens Complex. European Mosquito Bulletin, 23, 25-30.
- Vobis, M., D'Haese, J., Mehlhorn, H., Mencke, N., Blagburn, B.L., Bond, R., Denholm, I., Dryden, M.W., Payne, P., Rust, M.K., Schroeder, I., Vaughn, M.B. & Bledsoe, D. (2004) Molecular phylogeny of isolates of Ctenocephalides felis and related species based on analysis of ITS1, ITS2 and mitochondrial 16S rDNA sequences and random binding primers. Parasitology Research, 94, 219-226. https://doi.org/10.1007/s00436-004-1201-x
- Rubtsov, I.A. (1962) Short guide to blood-sucking black flies of the fauna of the USSR. USSR Academy of Sciences Publishing House, Moscow-Leningrad, 228 pp. [in Russian]
- Ruiz-Arrondo, I., Hernandez-Triana, L.M., Ignjatovic-Cupina, A., Nikolova, N., Garza-Hernandez, J.A., Rodriguez-Perez, M.A., Oteo, J.A., Fooks, A.R. & Lucientes Curdi, J. (2018) DNA barcoding of blackflies (Diptera: Simuliidae) as a tool for species identification and detection of hidden diversity in the eastern regions of Spain. Parasites & Vectors, 11, 463. https://doi.org/10.1186/s13071-018-3046-7
- Usova, Z.V. (1997) A checklist of Simuliidae (Diptera) of Leningrad Province. International Dipterological Resource, 8 (1), 23-24.
- Vaulin, O.V. & Novikov, Yu. M. (2012) Polymorphism and interspecific variability of cytochrome oxydase subuniti (COI) gene nucleotide sequence in sibling species of A and B Anopheles messeae and An. beklemishevi (Diptera: Culicidae). Vavilov Journal of Genetics and Breeding, 16 (2), 358-368.
- Vaulin, O.V. & Novikov, Yu. M. (2016) Phylogenetic relationships between Palaearctic species of the Anopheles maculipennis complex (Diptera: Culicidae) revealed by different approaches and markers. The problem of consensus. Vavilov Journal of Genetics and Breeding, 20 (5), 695-703. https://doi.org/10.18699/VJ16.189
- Vaulin, O.V., Karagodin, D.A., Zakharov, I.K & Baricheva E.M. (2018) Dynamics of malaria mosquito species composition in Siberian populations detected by restriction analysis. Russian Journal of Genetics, 54, 838-847. https://doi.org/10.1134/S1022795418070153
- Yankovsky, A.V. (2002) A key for the identification of blackflies (Diptera: Simuliidae) of Russia and adjacent countries (former USSR). Russian Academy of Sciences, St. Petersburg, 569 pp. [in Russian].