Published August 19, 2022
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Hydnobolites oaxacanus (Pezizales, Ascomycota), a new species from Mexico
Authors/Creators
- 1. Tecnológico Nacional de México. Instituto Tecnológico de Ciudad Victoria. Blvd. Emilio Portes Gil #1301Pte. CP87010, Ciudad Victoria, Tamaulipas, Mexico. & Colegio de Postgraduados, Km 36.5, Montecillo, Texcoco, Estado de México, 56230, Mexico. & yootspooj@gmail.com; https://orcid.org/0000-0002-8970-9571
- 2. Tecnológico Nacional de México. Instituto Tecnológico de Ciudad Victoria. Blvd. Emilio Portes Gil #1301Pte. CP87010, Ciudad Victoria, Tamaulipas, Mexico. & sanfrancisco.hv89@gmail.com; https://orcid.org/0000-0003-1625-0795
- 3. Tecnológico Nacional de México. Instituto Tecnológico de Ciudad Victoria. Blvd. Emilio Portes Gil #1301Pte. CP87010, Ciudad Victoria, Tamaulipas, Mexico. & sanflores37@gmail.com; https://orcid.org/0000-0001-5630-3084
- 4. Tecnológico Nacional de México. Instituto Tecnólogico Superior de Irapuato. Silao-Irapuato km 12.5, Irapuato, 36821, Guanajuato, Mexico. & rafael.pr@irapuato.tecnm.mx; https://orcid.org/0000-0001-9435-4835
Description
Fuente, Javier Isaac De La, García-Jiménez, Jesús, Martínez-González, César Ramiro, Ayala-Vásquez, Olivia, Del-Valle, Juan Francisco Hernández, Florez, Marcos Sánchez-, Peña-Ramírez, Rafael (2022): Hydnobolites oaxacanus (Pezizales, Ascomycota), a new species from Mexico. Phytotaxa 559 (1): 73-80, DOI: 10.11646/phytotaxa.559.1.8, URL: http://dx.doi.org/10.11646/phytotaxa.559.1.8
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- URL
- https://www.checklistbank.org/dataset/223551
- LSID
- urn:lsid:plazi.org:pub:52514B53FFE7FFAA272AFFF2C17B280F
- URL
- http://publication.plazi.org/id/52514B53FFE7FFAA272AFFF2C17B280F
References
- Alvarado, P., Moreno, G., Manjon, J.L., Gelpi, C., Kaounas,V., Konstantinidis, G., Barseghyan, G. & Venturella, G. (2001) First molecular data on Delastria rosea, Fischerula macrospora and Hydnocystis piligera. Boletin de la Sociedad Micologica de Madrid 35: 75- 81.
- Bahram, M., Polme, S., Koljalg, U., Zarre, S. & Tedersoo, L. (2012) Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran. New Phytologist 193 (2): 465-473. https://doi.org/10.1111/j.1469-8137.2011.03927.x.
- Brock, P.M., Doring, H. & Bidartondo, M.I. (2009) How to know unknown fungi: the role of a herbarium. New Phytologist 181 (3): 719-724. https://doi.org/10.1111/j.1469-8137.2008.02703.x
- Castellano, M.A., Trappe, J.M. & Luoma, D.L. (2004) Sequestrate Fungi. In: Mueller, G.M., Bills, G.F. & Foster, M.S. (eds.) Biodiversity of fungi. Inventory and monitoring methods. Elsevier Academic Press, San Diego, pp. 197-213.
- Castellano, M.A., Trappe, J.M., Maser, Z. & Maser, S. (1986) Key to spores of the genera of hypogeous fungi of North America, with reference to animal mycophagy. Mad River Press, Eureka, 185 pp.
- Cazares, E., Garcia, J., Castillo, J. & Trappe, J.M. (1992) Hypogeous fungi from northern Mexico. Mycologia 84: 341-359. https://doi.org/10.2307/3760186
- Corda, A.K.L. (1854) Iconum fungorum hucusque cognitorum. Prague. 91 pp.
- Erlandson, S.R., Savage, J.A., Cavender-Bares, J.M. & Peay, K.G. (2016) Soil moisture and chemistry influence diversity of ectomycorrhizal fungal communities associating with willow along an hydrologic gradient. FEMS Microbiology Ecology 92 (1): fiv148. https://doi.org/10.1093/femsec/fiv148
- Fisch, E. (1938) Die Naturlichen Pflanzenfamilien. Leipzig. 462 pp.
- Fisch, E. (1905) Repertorium specierum novarum regni vegetabilis. Berlin. 176 pp.
- Frandsen, P.B., Calcott, B., Mayer, C. & Lanfear, R. (2015) Automatic selection of partitioning schemes for phylogenetic analyses using iterative k -means clustering of site rates. BMC Evolutionary Biology 15: 1-17. https://doi.org/10.1186/s12862-015-0283-7
- Gomez-Reyes, V.M., Vasquez-Marrufo, G., Ortega-Gomez, A.M. & Guevara-Guerrero, G. (2018) Ascomicetos hipogeos de la region occidental del Sistema Volcanico Transversal, Mexico. Acta Botanica Mexicana 125: 37-48. https://doi.org/10.21829/abm125.2018.1327
- Gilkey, H.M. (1916) A revision of the Tuberales of California. University of California Publications in Botany 6: 275-356.
- Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
- Healy, R.A., Smith, M.E., Bonito, G.M., Pfister, D.H, Ge, Z.W., Guevara, G., Williams, G., Stafford, K., Kumar, L., Lee, T., Hobart, C., Trappe, J., Vilgalys, R. & McLaughlin, D.J. (2013) High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales. Molecular Ecology 22 (6): 1717-1732. https://doi.org/10.1111/mec.12135
- Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17 (8): 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30 (4): 772-780. https://doi.org/10.1093/molbev/mst010
- Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30 (14): 3059-3066. https://doi.org/10.1093/nar/gkf436
- Katoh, K., Rozewicki, J. & Yamada, K.D. (2017) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20 (4): 1160-1166. https://doi.org/10.1093/bib/bbx108
- Kornerup, A. & Wanscher, H. (1978) Methuen handbook of colour. 3rd edition. Eyre, London, 227 pp.
- Lang, C., Seven, J. & Polle, A. (2011) Host preferences and differential contributions of deciduous tree species shape mycorrhizal species richness in a mixed Central European Forest. Mycorrhiza 21 (4): 297-308. https://doi.org/10.1007/s00572-010-0338-y.
- Lanfear, R., Calcott, B., Kainer, D., Mayer, C. & Stamatakis, A. (2014) Selecting optimal partitioning schemes for phylogenomic datasets. BMC Evolutionary Biology 14: 1-14. https://doi.org/10.1186/1471-2148-14-82
- Lanfear, R., Frandsen, P.B., Wright, A.M., Senfeld, T. & Calcott, B. (2016) PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34 (3): 772-773.
- Li, T., Cheng, M., Xu, Y-Y. & Fan, L. (2019) Four new species of Hydnobolites (sequestrate Pezizaceae, Ascomycota) from China. Mycological progress 18: 405-414. https://doi.org/10.1007/s11557-018-01465-z
- Leonardi, M., Iotti, M., Oddis, M., Lalli, G., Pacioni, G., Leonardi, P., Maccherini, S., Perini, C., Salerni, E. & Zambonelli, A. (2013) Assessment of ectomycorrhizal fungal communities in the natural habitats of Tuber magnatum (Ascomycota, Pezizales). Mycorrhiza 23 (5): 349-358. https://doi.org/10.1007/s00572-012-0474-7
- Long, D., Liu, J., Han, Q., Wang, X. & Huang, J. (2016) Ectomycorrhizal fungal communities associated with Populus simonii and Pinus tabuliformis in the hilly-gully region of the Loess Plateau, China. Scientific Reports 6: 24336. https://doi.org/10.1038/srep24336
- Martinez-Gonzalez, C.R., Ramirez-Mendoza, R., Jimenez-Ramirez, J., Gallegos-Vazquez, C. & Luna-Vega, I. (2017) Improved method for genomic DNA extraction for Opuntia Mill. (Cactaceae). Plant Methods 13: 1-10. https://doi.org/10.1186/s13007-017-0234-y
- Muller, K., Quandt, D., Muller, J. & Neinhuis, C. (2005) PhyDE®-Phylogenetic data editor. Program distributed by the authors, version 10.0. Available from: https://www.phyde.de (accessed 22 November 2021).
- Pegler, D.N., Spooner, B.M. & Young, T.W.K. (1993) British truffles. A revision of British hypogeous fungi. The Board of Trustees of the Royal Botanical Gardens, Kew, 215 pp.
- Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) Tracer v1.6. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 22 November 2021).
- Raymundo, T., Valenzuela, R., Ramirez-Martinez, J.C., Martinez-Pineda, M., Cobos-Villagran, A. Trejo-Arana, A., Sanchez-Flores, M., Gay-Gonzalez, A.D. & Luna-Vega, I. (2020) New records of Ascomycetes from the Tropical Montane Cloud Forest of eastern Mexico. Phytotaxa 454 (3): 161-185. https://doi.org/10.11646/phytotaxa.454.3.1
- Roy, M., Rochet, J., Manzi, S., Jargeat, P., Gryta, H., Moreau, P.A. & Gardes, M. (2013) What determines Alnus -associated ectomycorrhizal community diversity and specificity? A comparison of host and habitat effects at a regional scale. New Phytologist 198 (4): 1228- 1238. https://doi.org/10.1111/nph.12212
- Sanchez-Flores, M., Valenzuela, R., Hernandez-Munoz, M.A., Garcia-Jimenez, J., Martinez-Pineda, M. & Raymundo, T. (2020) Ascomicetos del bosque mesofilo de montana de Honey, Puebla de los Angeles, Mexico. Acta Botanica Mexicana 127: e1719. https://doi.org/10.21829.2020.1719
- Smith, M.E. & Schmull, M. (2011) Tropical truffles: English translation and critical review of F. von Hohnel's truffles from Java. Mycological Progress 10 (2): 249-260. https://doi.org/10.1007/s11557-010-0694-1
- Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Tedersoo, L., Mett, M., Ishida, T.A. & Bahram, M. (2013) Phylogenetic relationships among host plants explain differences in fungal species richness and community composition in ectomycorrhizal symbiosis. New Phytologist 199 (3): 822-831.
- Trappe, M., Evans, F. & Trappe, J. (2007) Field Guide to North American Truffles: Hunting, Identifying, and Enjoying the World's Most Prized Fungi. Ten Speed Press, California. 144 pp.
- Trappe, J.M., Molina, R., Luoma, D.L., Cazares, E., Pilz, D., Smith, J.E., Castellano, M.A., Miller, L. & Trappe, J.M. (2009) Diversity, ecology and conservation of the truffle fungi in forests of the pacific northwest. US Dept. of Agriculture, Forest Service General Technical Report, PNW-GTR-772, Portland 194 pp.
- Tulasne, R.L. & Tulasne, C. (1843) Annales des sciences naturelles. Botanique 19: 278.
- Tulasne, R.L. & Tulasne, C. (1851) Fungi hypogaei. Histoire et monographie des champignons hypoges. Paris. 222 pp.
- Vittadini, C. (1831) Monographia tuberacearum. Mediolani, 88 pp.
- White, T.J., Bruns, T.D., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic, San Diego, pp. 315-322.
- Wu, E., Lan, Z., Xiang, Y. & Han, Z. (1993) A new species of Tuberales from China. Mycological research 97 (8): 1021-1022.
- Zhang, Z., Schwartz, S., Wagner, L. & Miller, W. (2000) A greedy algorithm for aligning DNA sequences. Journal of Computational Biology 7: 203-214.