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Published August 18, 2022 | Version v0.14.3
Software Open

PartSeg - segmentation and reconstruction tool for 3D microscopy images

Authors/Creators

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Institute of Informatics, University of Warsaw, Warsaw, Poland
  • 2. Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
  • 3. Institute of Informatics, University of Warsaw, Warsaw, Poland

Contributors

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

Description

0.14.3 Bug Fixes
  • Fix lack of rendering ROI when load image from segmentation (#694)
  • Fix running ROI extraction from napari widget (#695)
  • Delay setting image if an algorithm is still running (#627)
  • Wrong error report whe no component is found in restatrtable segmentation algorithm. (#633)
  • Fix process of build documentation (#653)
Refactor
  • Clean potential vulnerabilities (#630)
Testing
  • Add more tests for common GUI elements (#622)
  • Report coverage per package. (#639)
  • Update conda environment to not use PyQt5 in test (#646)
  • Add tests files to calcualate coverage (#655)
Changes:
  • 41e6ff659c0a9f3af959fd12bc1e81da7a8ecb9f update changelog
  • ca3f1cd19ef8c6bb50110b2c046a31d92797d478 Fix running segmentation from napari widget (#695)
  • b7c185fb92d131a3fe96467f455ebff4f5695ed7 Fix lack of rendering ROI when load image from segmentation (#694)
  • f881a8a29bdee73e7696b31545153f051e9b7750 Bump bundle requirements versions (#693)
  • 8cce4bc3acc405a059b473b8073cdc52c9f52837 [pre-commit.ci] pre-commit autoupdate (#689)
  • 515710c336a2ac09414bd68e86ddce4895e67a39 [pre-commit.ci] pre-commit autoupdate (#685)
  • 14294f7dbea346bd7cab31f5428c9bcc7665ff19 [pre-commit.ci] pre-commit autoupdate (#670)
  • 887f6e4034d6982519f783e6628cb65ec9266b65 Bump requirements (#676)
  • 2f04409d83549694c74317cb0c48a2b9be498560 Fix failing CI (#673)

  • 1993c899017974d0af1840ad87c0a54568e0f12d allow manual dispatch tests <details><summary><b>See More</b></summary>

  • 566ad98bca7b2af7cd08aeb999b846bbc3cab87e build(deps): bump pyinstaller from 5.1 to 5.2 in /requirements (#667)

  • bc9b87b8267cd1a117312388bc8fed87a54d800b [pre-commit.ci] pre-commit autoupdate (#666)
  • ad3668809122df6d2d34550516691075391eec3f build(deps): bump mahotas from 1.4.12 to 1.4.13 in /requirements (#662)
  • a1edc335e6e5a969f167be8c21c7521f36109b05 build(deps): bump lxml from 4.9.0 to 4.9.1 in /requirements (#665)
  • 13b151d2ad516803784ab6eebaa707c4b4e7691f build(deps): bump numpy from 1.22.4 to 1.23.0 in /requirements (#660)
  • d3a5a35737d028378514a6426be13ebe2cd38430 build(deps): bump sentry-sdk from 1.5.12 to 1.6.0 in /requirements (#659)
  • ee0c304bb7a1bd94bc8f29d496d345f96bab2fdb test: Add tests files to calcualate coverage (#655)
  • d6e1a9153c1291a86a760c9c953c85c0e51445ce Bump bundle requirements (#654)
  • 2f14925a983500c528f86f28b8642cf86a86ab84 fix: Fix process of build documentation (#653)
  • 33ac6a0baaefd3a79a5fb61ff80a1e7d083f84d1 build(deps): bump pyqt5 from 5.15.6 to 5.15.7 in /requirements (#652)
  • 2e68055963b03e92390f40d6a7f0036a2a390bec [pre-commit.ci] pre-commit autoupdate (#650)
  • fecf346279d085d74edc26c7e667ca7d1f038679 build(deps): bump actions/setup-python from 3 to 4 (#648)
  • 6dd209697a79ba23674ef4c5a97585715cfb2eaa build(deps): bump requests from 2.27.1 to 2.28.0 in /requirements (#647)
  • bd23f872fea4bea2cf201daf09c875a06984330c [pre-commit.ci] pre-commit autoupdate (#642)
  • 1c87c66c43c9cd01204c4ba53e3d3b6bc97423e9 test: Update conda environment to not use PyQt5 in test (#646)
  • 84fea4e120629d5a528708e4c7b7921d19524331 test: Report coverage per package. (#639)
  • 7e3b967e466e0d0d4866e782ac2f0cf72903508f build(deps): bump codecov/codecov-action from 1 to 3 (#637)
  • ce908288bf677c3fe5365124d3dc33f88c6076a1 Fix pre tests (#635)
  • cc8412a5df1407ed85617272f97885da193b1506 build(deps): bump tifffile from 2022.4.28 to 2022.5.4 in /requirements (#619)
  • c79f1f3b847d64cb8892f8aab54ba3b96207084e fix: Wrong error report whe no component is found in restatrtable segmentation algorithm. (#633)
  • 14530514e0f58efd779ab6049fbd7311b25b5652 refactor: clean potential vulnerabilities (#630)
  • 1d6ef7914c4b0d6a533fe384ee6da5b76e807660 build(deps): bump pyinstaller from 5.0.1 to 5.1 in /requirements (#629)
  • ba0e8dd33be9ca47af499951734ad8c05950f3d9 build(deps): bump qtpy from 2.0.1 to 2.1.0 in /requirements (#613)
  • c7cfebb046d4706bdc88bc8f0c9e73733e57061f Test if pyinstaller bundle work for --pre tests (#628)
  • 0a38fc63d779ec0a801c2b840cc62ed6c6d3b19a test: Add more tests for common GUI elements (#622) [ #623 ]
  • fdc5e37261da22d9f09685cdd52302316e621457 fix: Delay setting image if an algorithm is still running (#627)
  • 0498f17120107fc97513931761f71fdcfc8adf75 Add issue templates (#626)
  • 9caf4764500099692eb5c2ea73d1d702bd70dbf0 [pre-commit.ci] pre-commit autoupdate (#624)

This list of changes was auto generated.</details>

Files

4DNucleome/PartSeg-v0.14.3.zip

Files (7.3 MB)

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Additional details

Related works

Is supplement to
https://github.com/4DNucleome/PartSeg/tree/v0.14.3 (URL)