Published August 4, 2022
| Version v1.1.12
Software
Open
QSMxT/QSMxT: v1.1.12
Authors/Creators
- 1. The University of Queensland
- 2. @CAIsr
Description
- Added automated 'gaussian' based threshold, which runs when masking is set to magnitude-based or phase-based and a threshold is not chosen
- Added qsmxt_version.py and version outputs to details_and_citations.txt file
- Added logging system with INFO, WARNING, and ERROR levels, with logs written to the output folder for each step
- Added NIfTI to BIDS conversion
- Improved BIDS compliance - test datasets should now pass the BIDS validator
- Changed to UTF-8 encoding for reading and writing JSON files due to problems with umlauts and other characters in headers
- Updated and added relevant citations
- Removed all reliance on FSL apart from BET, reimplementing functionalities using native python, numpy, nibabel, scipy and bet2
- Reordered QSM workflow in run_2_qsm.py to be more readable
- Separated masking logic into a separate interface interfaces/nipype_interface_masking.py
- Scripts can be invoked without specifying python3
- Removed duplicate add_bet node in run_2_qsm.py
- Changed automated testing dependencies to use explicit includes rather than explicit excludes
Files
QSMxT/QSMxT-v1.1.12.zip
Files
(951.0 kB)
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md5:ee9dbcce79932a128ec25f9384dc54c2
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Additional details
Related works
- Is supplement to
- https://github.com/QSMxT/QSMxT/tree/v1.1.12 (URL)