Published August 1, 2022
| Version v1
Dataset
Open
Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022.
Creators
- 1. South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa
- 2. Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa and School of Public Health, University of the Witwatersrand, Johannesburg, South Africa
- 3. Centre for Tuberculosis, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa and School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
- 4. Fogarty International Center, NIH, Bethesda, MD, USA
- 5. Division of Public Health Surveillance and Response, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa and Right to Care, Pretoria, South Africa
Description
Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022. These data were used to estimate the time-varying reproduction number (R) in South Africa, as described in https://www.medrxiv.org/content/10.1101/2022.07.22.22277932v1.full.
Files
All_admit_ts_ec.csv
Files
(20.8 MB)
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Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2022.07.22.22277932 (DOI)
Funding
- Characterization of SARS-CoV-2 transmission dynamics, clinical features and disease impact in South Africa, a setting with high HIV prevalence 221003
- Wellcome Trust