Published July 29, 2022
| Version v1.2.0
Software
Open
carmonalab/scGate: scGate version 1.2
Authors/Creators
- 1. Ludwig Center for Cancer Research, University of Lausanne
- 2. @TheGBLab
Description
New features in version 1.2.0
- Simultaneously evaluate multiple gating models, given as a list to
modelparameter- Returns individual gatings as well as a combined cell type annotation from all the models (scGate_multi metadata column)
- Allows running scGate as a multi-class classifier and annotate cell types in a dataset
- New
reductionparameter- Allows nearest-neighbor smoothing on an existing dimensionality reduction (e.g. "pca" or "harmony")
- Can significantly speed up computation time and annotation of integrated objects
- Uses Bioconductor version of UCell
Files
carmonalab/scGate-v1.2.0.zip
Files
(50.1 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/carmonalab/scGate/tree/v1.2.0 (URL)