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Published July 29, 2022 | Version v3

ISDB: In Silico Spectral Databases of Natural Products

  • 1. University of Fribourg
  • 2. University of Illinois at Chicago
  • 3. University of Geneva

Description

An In Silico spectral DataBase (ISDB) of natural products calculated from structures aggregated in the frame of the LOTUS Initiative (https://doi.org/10.7554/eLife.70780).
Fragmented using cfm-predict 4 (https://doi.org/10.1021/acs.analchem.1c01465) .

In silico spectral database preparation and use for dereplication initially described in Integration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication https://doi.org/10.1021/ACS.ANALCHEM.5B04804

See https://github.com/mandelbrot-project/spectral_lib_builder for associated building scripts.

See https://github.com/mandelbrot-project/spectral_lib_matcher for associated matching scripts.

Files

Files (1.7 GB)

Name Size
md5:ccabd1ad75108f60d60e811a59bb3fcf
776.1 MB Download
md5:8fa60f57ba897cb76788e644b1b8341f
967.2 MB Download

Additional details

Related works

Is derived from
Dataset: 10.5281/zenodo.6786307 (DOI)