Published July 25, 2022
| Version 3.1.0
Software
Open
biobakery/MetaPhlAn: 3.1.0
Authors/Creators
- 1. University of Trento
- 2. Weill Cornell Medicine
- 3. Okinawa Institute of Science and Technology
- 4. INRA MetaGenoPolis
- 5. University of Freiburg
- 6. Edmund Mach Foundation
Description
MetaPhlAn 3.1 represents a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced microbial genomes and their constituent genes to UniProt resources alongside additional removal of low-quality species (see PMID:33944776 for the definition of "low-quality species").
What has changed in version 3.1:
- 433 low-quality species were removed from the MetaPhlAn 3.1 marker database and 2,680 species were added (for a new total of 15,766; a 17% increase).
- Marker genes for a subset of existing bioBakery 3 species were also revised.
- Most existing bioBakery 3 species pangenomes were updated with revised or expanded gene content.
- MetaPhlAn 3.1 software has been updated to work with revised marker database.
Files
biobakery/MetaPhlAn-3.1.0.zip
Files
(313.0 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/biobakery/MetaPhlAn/tree/3.1.0 (URL)