Published July 19, 2026 | Version v5.11.0
Software Open

Mol* library

Authors/Creators

Description

  • Fix LAMMPS unsorted-atom handling (trajectory frame ordering and data-file bonds)
  • Add variant option (rectangle/circle) to the best-fit Plane (#358)
  • Add VTK PolyData .vtp file format support
  • Bloom on transparent and emissive geometry
    • Move bloom into the postprocessing/illumination pass (composited inline)
    • Tighten isBackground to handle packed transparent depth precisely
    • Enable bloom on transparent background
    • Background-aware blend: screen on transparent background, PMA over on opaque background, additive on geometry
    • Occlude emissive bloom behind opaque foreground (e.g. opaque label backgrounds) by reusing the opaque depth (#1881)
    • Dim emitters behind transparent foreground by its coverage
    • Text label backgrounds occlude/dim emitters using their own opacity
  • Fix size-only representation theme updates in updateRepresentationsTheme.
  • Fix ASA coloring for hydrogens
  • Add histogramPercentile, histogramRobustStats, downsampleHistogram to mol-math/histogram
  • Direct-volume transfer function improvements
    • Add data-aware default control points and preset library
    • Use log-scale on y-axis in control-points UI
  • Add defaultSnapshotIndex argument to MVSLoadOptions to enable loading a snapshot other than the first one by default
  • Fix loaders.loadMvs* options type
  • Read simulation box from gro and lammps files
  • Add FFT to mol-math
  • Add SF-CIF and MTZ structure factors file formats support
  • Add support for calculating volumes from structure factors
  • Rework Superposition UI panel
  • Add Ligand alignments by maximum common connected subgraphs (MCCS)
  • Handle unobserved residues from entity_poly_seq (#965)
  • Refine step for coarse BoundaryHelper instances (#1455)
  • Refactor StructureElement.Loci.getBoundary
    • Add .getBoundingSphere, reuse whole structure/unit boundary
    • [Breaking] remove transform argument

Notes

Please cite this software using the metadata from 'preferred-citation'.

Files

molstar/molstar-v5.11.0.zip

Files (7.7 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/molstar/molstar/tree/v5.11.0 (URL)

Software

Repository URL
https://github.com/molstar/molstar