Published July 19, 2022
| Version v0.7
Software
Open
Arbor Library v0.7
Creators
- Nora Abi Akar1
- John Biddiscombe1
- Benjamin Cumming1
- Marko Kabic1
- Vasileios Karakasis1
- Wouter Klijn2
- Anne Küsters2
- Alexander Peyser2
- Stuart Yates1
- Thorsten Hater2
- Brent Huisman2
- Espen Hagen3
- Robin De Schepper4
- Charl Linssen2
- Harmen Stoppels1
- Sebastian Schmitt5
- Felix Huber6
- Max Engelen7
- Fabian Bösch1
- Jannik Luboeinski8
- Simon Frasch1
- 1. CSCS
- 2. FZJ
- 3. University of Oslo
- 4. University of Pavia
- 5. University of Heidelberg
- 6. University of Stuttgart
- 7. Erasmus MC
- 8. University of Göttingen
Description
What's Changed
Neuroscience/documentation
- prep extracellular potentials tutorial. Updated corresponding example by @espenhgn in #1825
- Add documentation on faster NMODL. by @thorstenhater in #1840
- Add tstop doc in recipe API doc by @schmitts in #1852
- Use list comprehension to speed up creation of connections by @schmitts in #1864
- Support markers in neurolucida ascii files by @bcumming in #1867
- simplified
create_polygon
function in lfpykit example by @espenhgn in #1881 - Better key for the
lfpykit
intersphinx mapping by @Helveg in #1878 - Sort (in python) the mechanism names (for convenience). by @thorstenhater in #1882
- Always emit weight expression. by @thorstenhater in #1875
- Add support for epoch callbacks by @bcumming in #1873
- Add introspection for global properties. by @thorstenhater in #1890
- Add point probes to demo by @schmitts in #1891
- Tut/use avail threads by @brenthuisman in #1900
- Allen tutorial by @brenthuisman in #1781
- New policy 'round_robin_halt' by @jlubo in #1868
- Axial Diffusion by @thorstenhater in #1729
- Add some convenience to simulation creation. by @thorstenhater in #1904
- Predefine SWC Regions. by @thorstenhater in #1911
- Diffusion Example Improvements (and a bit of clean-up) by @thorstenhater in #1914
- Inhomogeneous parameters by @AdhocMan in #1887
- Fix line numbers in tutorials and assorted doc corrections by @brenthuisman in #1917
Core
- Be more lenient when accepting args to file I/O by @thorstenhater in #1819
- modcc: generate missing
node_index
read needed for reading timet
in the mechanisms by @noraabiakar in #1866 - Add Developer Documentation by @thorstenhater in #1639
- Isolate external catalogues from libarbor.a. by @thorstenhater in #1837
Build, testing, CI
- Build Python 3.10 binary wheels. Add v0.6 to spackfile. by @brenthuisman in #1817
- export API by @boeschf in #1824
- export doc by @boeschf in #1849
- Include CMAKE+CUDA iff NVCC is needed. by @thorstenhater in #1855
- Bit more on Spack, fix in tutorial by @brenthuisman in #1838
- json submodule added by @brenthuisman in #1871
- Fix a bug where Debian/Ubuntu's Python malfunctions by @brenthuisman in #1894
- Have dependency version policy by @brenthuisman in #1865
- random123 submodule added by @brenthuisman in #1872
- Fix tool installation paths. by @thorstenhater in #1905
- Adopt Black for Python. by @thorstenhater in #1906
- add cmake checks for non-bundled random123 by @bcumming in #1907
- Temporarily disable A64FX CI by @bcumming in #1910
- Adopt flake8 by @thorstenhater in #1908
- Move Python build to
pyproject.toml
, bump Python minver to 3.7, fix macos wheel generation by @brenthuisman in #1916 - Weekly CI Python wheel build pushes to Test.PyPI.org by @brenthuisman in #1921
Fixes, optimization
- Users may not give dt < 0. by @thorstenhater in #1821
- Fix
ubenches
compilation errors by @noraabiakar in #1828 - death test: wrong signal by @boeschf in #1858
- Make brunel.py setup faster. by @thorstenhater in #1854
- add a better error. by @thorstenhater in #1846
- Fix load_component for label-dict by @noraabiakar in #1859
- Found out the hard way that this is still needed :/ by @thorstenhater in #1860
- Elide memcpy where not needed by @thorstenhater in #1863
- Bug fix: Fix voltage vector size in threshold_watcher contstructor by @noraabiakar in #1820
- remove test statements for move ctor by @boeschf in #1899
- Code Quality: PVS Studio Finds by @thorstenhater in #1901
- Two context decomp swaps were forgotten by @brenthuisman in #1912
New Contributors
Files
Files
(15.0 MB)
Name | Size | Download all |
---|---|---|
md5:847d2aa2b1e5c251cd800719f78b0530
|
15.0 MB | Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/arbor-sim/arbor/tree/v0.5.2 (URL)