Published December 24, 2021
| Version v1
Dataset
Open
LotuS2: An ultrafast and highly accurate tool for amplicon sequencing analysis
Creators
- 1. Quadram Institute Bioscience & Earlham Institute
- 2. Earlham Institute
- 3. Quadram Institute Bioscience
- 4. Swedish University of Agricultural Sciences & University of Tartu
Description
Amplicon sequencing is an established and cost-efficient method for profiling microbiomes. However, many available tools to process this data require both bioinformatics skills and high computational power to process big datasets. Furthermore, there are only few tools that allow for long read amplicon data analysis. To bridge this gap, we developed the LotuS2 (Less OTU Scripts 2) pipeline, enabling user-friendly, resource friendly, and versatile analysis of raw amplicon sequences.
Notes
Files
Files
(3.7 GB)
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md5:e93bc5239365f727c43216f25d9d3986
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4.2 MB | Download |
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1.2 MB | Download |
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1.3 MB | Download |
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6.1 MB | Download |
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6.7 MB | Download |
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3.9 MB | Download |
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4.0 MB | Download |
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5.2 MB | Download |
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1.2 MB | Download |
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1.3 MB | Download |
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3.7 MB | Download |
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3.7 MB | Download |
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9.4 MB | Download |
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9.9 MB | Download |
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8.0 MB | Download |
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8.7 MB | Download |
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9.4 MB | Download |
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9.7 MB | Download |
md5:10609f468e79bbbd07c1e45a7362906d
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27.8 MB | Download |
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28.8 MB | Download |
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4.4 MB | Download |
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4.2 MB | Download |
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2.3 MB | Download |
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2.4 MB | Download |
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11.0 kB | Download |
md5:d22f7e260170e3c7f9b3141b0c820965
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13.6 kB | Download |
md5:8d4c40c064a4d616a8d41f322ab151ff
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3.3 MB | Download |
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3.4 MB | Download |
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1.1 MB | Download |
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1.1 MB | Download |
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13.8 MB | Download |
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15.7 MB | Download |
md5:592e701be008d2ec7f4aade815ace18b
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16.7 kB | Download |
md5:566971969c2e8ac83ac0fc9839c368e2
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19.7 kB | Download |
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12.5 MB | Download |
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13.3 MB | Download |
md5:cdf68a53371e8c87ad85277041f424cf
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6.9 MB | Download |
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7.1 MB | Download |
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4.5 MB | Download |
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4.5 MB | Download |
md5:c8d83274448f11444eb16a96351a9670
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10.8 MB | Download |
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11.3 MB | Download |
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4.8 MB | Download |
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5.0 MB | Download |
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5.6 MB | Download |
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5.8 MB | Download |
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5.6 MB | Download |
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5.7 MB | Download |
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12.0 MB | Download |
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12.4 MB | Download |
md5:0acdd3bf5ff87b91774b935100b0442a
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9.6 MB | Download |
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10.2 MB | Download |
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2.0 MB | Download |
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2.1 MB | Download |
md5:98e555b84b6d2a891a2f1e1c01ca81a3
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10.0 MB | Download |
md5:694b5a2b1f211dbb3f8e4d5a440edbe0
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10.6 MB | Download |
md5:8a3dbf7e488f49b4d2a8d3fc351a293e
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13.1 MB | Download |
md5:9a47838c56aad3af4f600d0818ca213f
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13.9 MB | Download |
md5:748e0eb366dcb9b33e1e7f9f5a08820a
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11.0 MB | Download |
md5:b7495370ccfde2d5fbfa11c736e392ec
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11.9 MB | Download |
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2.4 MB | Download |
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2.6 MB | Download |
md5:6955e838470d94ff6d465cff7ea9f82c
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11.8 MB | Download |
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12.4 MB | Download |
md5:ced4e77b1e0bb7048e3864f76621a692
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2.3 MB | Download |
md5:2731c4ef15f7eef2f12d0c4e6c26b78b
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2.5 MB | Download |
md5:5d72275ea308869b814bd883f14b575e
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2.2 MB | Download |
md5:721485743381a5982e5b7fa170845940
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2.4 MB | Download |
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1.1 MB | Download |
md5:21d34d8a944306665ab07ca097613fda
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1.2 MB | Download |
md5:7435bbaa565ee3c62aa25be7db9e1ced
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5.6 MB | Download |
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5.9 MB | Download |
md5:35cbc96d37f7a13383ec93bdd1057394
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1.6 MB | Download |
md5:06955e2d2f149ec2d11c4576dd9bf036
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1.8 MB | Download |
md5:8cdf61ff0ada82d9879391e857e0c84f
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11.6 MB | Download |
md5:fe4acfcaaedd4a144f578b1572f91046
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11.3 MB | Download |
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1.4 MB | Download |
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1.5 MB | Download |
md5:35108e40f312b8c4ed4635bc78070d8c
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7.7 MB | Download |
md5:9b57786ba02932fddfe6df4087c1c749
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8.2 MB | Download |
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2.4 MB | Download |
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2.6 MB | Download |
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2.5 MB | Download |
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2.6 MB | Download |
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2.6 MB | Download |
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2.8 MB | Download |
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2.4 MB | Download |
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2.6 MB | Download |
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5.6 MB | Download |
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5.7 MB | Download |
md5:2748a3cb11e794ed1c74859b469317fc
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8.5 MB | Download |
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8.0 MB | Download |
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6.8 MB | Download |
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7.3 MB | Download |
md5:ca32f8abf84c44ffbddedffbf31a9417
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16.5 MB | Download |
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17.0 MB | Download |
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4.0 MB | Download |
md5:0aae14343391a28239beb5d9259cfbc5
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4.3 MB | Download |
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1.2 MB | Download |
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1.3 MB | Download |
md5:4063db385f0d42ff9bc80403bf44b947
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6.1 MB | Download |
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6.7 MB | Download |
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3.9 MB | Download |
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4.0 MB | Download |
md5:ddf43d0414db0d81c95ab91af45af910
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5.3 MB | Download |
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5.6 MB | Download |
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1.3 MB | Download |
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1.3 MB | Download |
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3.8 MB | Download |
md5:54e5a2a974b31a4a1e0d5cd1721f2c25
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3.8 MB | Download |
md5:7c16d0213437c995148f11b64e68f370
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9.5 MB | Download |
md5:2db905b176734c19133cce529b64ef73
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10.0 MB | Download |
md5:4c416fec0a0fd92ebbbc1853fd210ac9
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8.0 MB | Download |
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8.6 MB | Download |
md5:dca2527dfb525bcdb02eee8ed0f6b094
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9.5 MB | Download |
md5:8214cc49da09e0191c081027035cc3f8
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9.9 MB | Download |
md5:ad24c2d9fc16619c36cf15e1ff2f8ef7
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27.7 MB | Download |
md5:a15ab00efb1b8136de2019c6aee3c56b
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28.9 MB | Download |
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4.3 MB | Download |
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4.3 MB | Download |
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2.4 MB | Download |
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2.4 MB | Download |
md5:b609887377e650fe95aafed01345b506
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13.3 kB | Download |
md5:40518cc638e3d5a60f9692aa6d1b0c3c
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16.4 kB | Download |
md5:60d1040d19b15dce71f80013b67c3f2d
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3.4 MB | Download |
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3.4 MB | Download |
md5:1c5e62d24f167031a4ec441a041da452
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1.1 MB | Download |
md5:9acc0cc6e33a31990612828c18019ebb
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1.1 MB | Download |
md5:2e55673c5ce19dffe16554751d6cc274
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14.4 MB | Download |
md5:2a474f61af288cb730549ae8f795675e
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16.3 MB | Download |
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17.1 kB | Download |
md5:07fdc2fe7d29f246a37d4c837d3580c6
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20.1 kB | Download |
md5:d5e7d81331314ef9985828526cbd2b8f
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12.7 MB | Download |
md5:98bf1f9ee186ee76cbc434176b70ecda
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13.6 MB | Download |
md5:9843f024a6932a617ad05a1e728c9fc8
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7.0 MB | Download |
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7.3 MB | Download |
md5:9d7bde2e101d0081570b9af925a89633
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4.5 MB | Download |
md5:aa3798e4f67c8eda34177762726794ba
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4.6 MB | Download |
md5:19e42445e28fe0e53ed97314e818c0fe
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10.8 MB | Download |
md5:e610f25f37bb2148d9870cbb644d6465
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11.3 MB | Download |
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4.8 MB | Download |
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5.1 MB | Download |
md5:f46912a9a0f04f82828e059553cca806
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5.8 MB | Download |
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6.0 MB | Download |
md5:674c9029a8568a085691d326c6204984
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5.8 MB | Download |
md5:d608e3488353f79195bfaa5afcd86d3a
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5.9 MB | Download |
md5:ef5de700d4e26bfb257bc23d1d5946b2
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11.7 MB | Download |
md5:a76b553abf12613fa6f19673a2b2565c
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12.1 MB | Download |
md5:23eee0a4f2672edd8a9c00921a5c2f9d
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9.6 MB | Download |
md5:d14f32e46188a576c8a62013822da21d
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10.2 MB | Download |
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2.0 MB | Download |
md5:1b945728eb33ba12deb31e7971b320b3
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2.0 MB | Download |
md5:85b0d38bea09ac1822c71cc89374b1f6
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9.8 MB | Download |
md5:c7899cb66d6411d974a7282083b82d72
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10.5 MB | Download |
md5:3c70845be42fb0c72760e512a27ff808
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13.2 MB | Download |
md5:855a066f6b162c992049d92642677c3a
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13.9 MB | Download |
md5:dea6b958281372d61c2b5cc046224355
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11.0 MB | Download |
md5:7a0ad673ac61632048e02e57aed461ac
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11.9 MB | Download |
md5:25dbe1956540dd525ad0d44b14190f5a
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2.3 MB | Download |
md5:21f1e65f88ff17f9b5b0b8015b581f03
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2.6 MB | Download |
md5:2d6f8a1e7708f78eb0bd95c0ca179d24
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12.1 MB | Download |
md5:c72bf3e58bdd2b0303e6fafb07d9e6e0
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12.7 MB | Download |
md5:6ac3e7cf8b6469e63ecb919f6a6eeab3
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3.2 MB | Download |
md5:2a1a9ea7dcf9116df5e87703ea09969d
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3.4 MB | Download |
md5:8a86e13ecf898f3c797586fd911c2d2c
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2.3 MB | Download |
md5:479a3efef459672c0a670d776405f51e
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2.4 MB | Download |
md5:fa9b9033df70f213dc0dfe33c4d2d953
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2.3 MB | Download |
md5:d152cecd8d9371bfe4575b0c22d75db3
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2.5 MB | Download |
md5:c99244821553af0dc8151123d7b147ec
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1.1 MB | Download |
md5:b275421b791e80a1d9e3ca0f757cc067
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1.2 MB | Download |
md5:1ddc4cdabc90dfb0e85357b8ada4e40a
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5.8 MB | Download |
md5:c5e35b3265c18995226750139f86a076
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6.1 MB | Download |
md5:15b9088f62f18144a5f9afa2fdf6376b
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1.7 MB | Download |
md5:cc6325e5ba4e525c4343ab5b23e6cf6a
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1.8 MB | Download |
md5:cc27a2610a379b1b3f68551e5bbf3b00
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14.6 kB | Download |