Published July 11, 2022
| Version v2.2.1
Software
Open
MIT-LCP/mimic-code: MIMIC Code v2.2.1
Creators
- Alistair Johnson1
- Tom Pollard2
- Jim Blundell
- Brian Gow
- erinhong
- Nicolas Paris
- shu98
- JackieMe3
- Kien Dang
- Angus Zhang4
- Eric Carlson
- Qinyu Zhao
- etheleon5
- Andrew Barros
- a-chahin
- Lucas Bulgarelli6
- Hans0124SG
- Peter Szolovits7
- Sicheng Hao
- C. V. Cosgriff8
- Sravan R9
- Thomas M Ward
- alexmbennett2
- Bibo Hao10
- cx1111
- emilyva
- Fernando Andreotti11
- Ishrar Hussain
- James Wiggins
- Josh Gieringer
- 1. @mit-lcp
- 2. MIT
- 3. WHU
- 4. Wenzhou Medical University
- 5. @honestbee @fundMyLife @airasia
- 6. @MIT-LCP
- 7. MIT CSAIL
- 8. HUP
- 9. National University Of Singapore
- 10. https://haobibo.cn
- 11. Sensyne Health / Institute of Biomedical Engineering, University of Oxford
Description
This release updates the MIMIC Code repository to align with MIMIC-IV v2.0. It also contains many bug fixes.
Change log:
- This version (v2.2.1) fixes a bug in the workflow generating tables on BigQuery occurring in v2.2.0. The rest of the changes below are in comparison to v2.1.1.
- Build MIMIC scripts
- Updated PostgreSQL build scripts for MIMIC-IV v2.0 (#1328, thanks @alexmbennett2)
- Added SQLite build of MIMIC-IV (thanks @armando-fandango) and updated for MIMIC-IV v2.0
- Fixed MySQL build code (thanks @mdsung) and updated for MIMIC-IV v2.0
- Updated DuckDB code to work with MIMIC-IV v2.0
- Concept improvements
- The generation of BigQuery tables by the GitHub action no longer prints rows to the standard output
- Fixed incompatibility of
convert_bigquery_to_postgres.sh
on Mac OS X. The script should run on both Mac OS X and Ubuntu now. - Fixed imputation of cell counts (#1208, thanks @duanxiangjie)
- Added an initial concept mapping of labs to LOINC (thanks @a-chahin). This mapping will continue to be improved in this repository.
- Fixed matching of GCS value with prior value in the last 6 hours (#1248, thanks @prockenschaub)
- Added mapping tables for standard concepts for waveform data (#1321 and #1322, thanks @a-chahin)
Full Changelog: https://github.com/MIT-LCP/mimic-code/compare/v2.1.1...v2.2.1
Files
MIT-LCP/mimic-code-v2.2.1.zip
Files
(7.0 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/MIT-LCP/mimic-code/tree/v2.2.1 (URL)