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Published January 10, 2019 | Version 2.0.0
Software Open

sourmash: a library for MinHash sketching of DNA

Description

Major new features:

  • less stringent size accuracy parameters for ANI accuracy reporting (#2074)
  • only skip dist est if containment/jaccard are 0 or 1 (#2060)
  • emit fewer warnings about potential ANI estimation issues (#2061)

Minor new features:

  • fix lca summarize to support general collections for queries (#2107)
  • add compare --avg-containment (#2056)

Documentation updates:

  • fix search and gather docs (#2105)
  • fix CITATION.cff YAML and add a test for parseability and content. (#2103)

Developer updates:

  • move setup.cfg into pyproject.toml (#2097)
  • Fix downsample_scaled in core (#2108)
  • add picklist tests; support for allow_empty (#2106)
  • remove LazyLoadedIndex (#2104)
  • Bump web-sys from 0.3.57 to 0.3.58 (#2092)
  • Bump getrandom from 0.2.6 to 0.2.7 (#2090)
  • Bump wasm-bindgen-test from 0.3.30 to 0.3.31 (#2093)
  • Bump pypa/cibuildwheel from 2.6.1 to 2.7.0 (#2089)
  • Build: nix updates (#2088)
  • CI: split wheel building (#2087)
  • rust version bumps (#2086)
  • Update sphinx requirement from <5,>=4.4.0 to >=4.4.0,<6 (#2068)
  • Bump actions/setup-python from 3 to 4 (#2080)
  • Bump myst-parser from 0.17.2 to 0.18.0 (#2081)
  • Bump pypa/cibuildwheel from 2.5.0 to 2.6.1 (#2079)
  • remove unnecessary object from class definitions (#2077)

Notes

If you use this software, please cite it as below.

Files

sourmash-bio/sourmash-v4.4.1.zip

Files (20.8 MB)

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md5:6d77a743a59fbe15587252c29608a621
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Additional details

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