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Published July 7, 2022 | Version v3.0.2
Software Open

BioJulia/BioSequences.jl: v3.0.2

Authors/Creators

  • 1. University of Copenhagen
  • 2. The Earlham Institute
  • 3. RIKEN
  • 4. Wellesley College
  • 5. Helmholtz Munich
  • 6. Massey University
  • 7. Zymergen, Inc.

Description

BioSequences v3.0.2

Diff since v3.0.0

Closed issues:

  • Implement reverse translation (AminoAcid -> Codon) (#168)
  • findnext, findprev broken ... possible to add findall? (#215)
  • LongDNA, LongRNA "not defined" (#216)
  • Implement findall (#217)
  • What happened to DNAMer? (#222)
  • 🐛 in iscanonical / canonical (#225)
  • join(LongRNA{2}, (RNA_A,)) should work (#230)

Merged pull requests:

  • Small internal refactors (#210) (@jakobnissen)
  • Correct Julia compatibility entry (#214) (@CiaranOMara)
  • Add findall method (#218) (@CiaranOMara)
  • 🐛-fix iscanonical (#227) (@SabrinaJaye)
  • Fix small errors (#228) (@jakobnissen)
  • Sequence hashing: Bugfix and slight simplification (#229) (@jakobnissen)
  • Allow join to work with BioSymbol (#234) (@jakobnissen)
  • Fix ambiguity errors (#235) (@jakobnissen)
  • Use codeunits over unsafe_wrap (#239) (@jakobnissen)
  • Cosmetic changes in constructors (#240) (@jakobnissen)
  • Use naive hash fallback for BioSequence (#244) (@jakobnissen)
  • Reset Julia compat to v1.5 (#245) (@jakobnissen)

Files

BioJulia/BioSequences.jl-v3.0.2.zip

Files (140.1 kB)

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Additional details

Related works

Is supplement to
https://github.com/BioJulia/BioSequences.jl/tree/v3.0.2 (URL)