Published July 5, 2022 | Version v1
Dataset Open

Data of: Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts

  • 1. University of Tsukuba
  • 2. University of Tokyo
  • 3. National Institute of Advanced Industrial Science and Technology

Description

These files are results obtained in
Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts
by Yoshito Hirata, Arisa H. Oda, Chie Motono, Masanori Shiro & Kunihiro Ohta.

There are 33 files for the corresponding each reconstruction of three-dimensional chromosomone structures
for each cell.
There are 3D structures for 15 GM cells and 18 PBMC cells, which are obtained from the single cell Hi-C data of Tan et al. Science (2018).

For each file, there are 6 columns:
The first column corresponds to the allele (0: maternal, 1: paternal)
The second column corresponds to the chromosome (1-22: chromosome's number, 23: X, 24: Y)
The third column corrsponds to the base point.
The fourth column, the fifth column and the sixth column correspond to x-, y-, and z-axes of our reconstruction.

Notes

Each file represents the 3D chromosome structure for each cell.

For each file, there are 6 columns to represent 3D structure:
The first column corresponds to the allele (0: maternal, 1: paternal)
The second column corresponds to the chromosome (1-22: chromosome's number, 23: X, 24: Y)
The third column corrsponds to the base point.
The fourth column, the fifth column and the sixth column correspond to x-, y-, and z-axes of our reconstruction.

Funding provided by: AMED
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100009619
Award Number: JP22gm1310004

Funding provided by: Japan Science and Technology Agency
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100002241
Award Number: JPMJCR18S3

Files

README.txt

Files (207.0 MB)

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Additional details

Related works

Is derived from
10.5281/zenodo.6562620 (DOI)