Published July 5, 2022
| Version v1
Dataset
Open
Minimal dataset for "Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models"
Authors/Creators
- 1. Max Planck Institute for Informatics
- 2. Fraunhofer Institute for Biomedical Engineering
- 3. 1. Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa 2. National Health Laboratory Service, Tygerberg Business Unit, Cape Town, South Africa
- 4. Seq IT GmbH & Co.KG, Kaiserslautern, Germany
- 5. Institute of Immunology and Genetics, Kaiserslautern, Germany
- 6. Methods in Medical Informatics, Department of Computer Science, University of Tübingen, Germany
Description
This repository contains a minimal data set to reproduce all results that don't compromise the privacy concerns for the manuscript "Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models".
The repository contains the following data:
- adaptscore_acute.csv
- A csv file that contains the estimated adaptation scores for the acute data set with HLA I model.
- adaptscore_leftout.csv
- A csv file that contains the estimated adaptation scores for the leftout data set with the joint HLA I and HLA II model
- adaptscore_training.csv
- A csv file that contains the estimated adaptation scores for the traininig data set with the joint HLA I and HLA II model
- adaptscore_training_hla1_without_clin.csv
- A csv file that contains the estimated adaptation scores for the training data set with the HLA I model (via cross-validation)
- adaptscore_training_seed2.csv
- A csv file that contains the estimated adaptation scores for the training data set with the joint HLA I and HLA II model via cross-validation with another seed
Files
adaptscore_acute.csv
Files
(4.2 MB)
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Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2022.07.06.498925 (DOI)