ABRomics a digital platform on antimicrobial resistance to store, integrate, analyse and share multi-omics data
- 1. CNRS, Institut Français de Bioinformatique, IFB-core, UAR 3601, Evry, France ; Université Clermont Auvergne, AuBi Plateforme, Mésocentre Clermont Auvergne, F-63000 Clermont-Ferrand, France
- 2. Université Paris Cité and Univ Sorbonne Paris Nord, Inserm, IAME, 75018 Paris, France
- 3. Faculté des Sciences et Tehcniques, Université de Nantes, 44000 Nantes, France
- 4. CHRU de Clermont-Ferrand 58 rue Montalembert 63003 Clermont-Ferrand, France
- 5. Université Clermont Auvergne, AuBi Plateforme, Mésocentre Clermont Auvergne, F-63000 Clermont-Ferrand, France
- 6. Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub F-75015 Paris, France
- 7. Sorbonne Université/CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France
- 8. Institut Pasteur, Unité EERA, CNRS UMR604, 75015 PAris, France
- 9. CNRS UMR8030, Univ Evry-Val-d'Essonne, CEA, Genoscope, LABGeM, Evry, France
Description
Antibiotic resistance (ABR) is a major public health issue especially regarding the emergence and the global dissemination of multidrug resistant (MDR) isolates and of antibiotic resistance genes (ARGs) carried by mobile genetic elements. Reinforcing the sharing of high-quality sequence data for diagnostic and epidemiological applications, together with interoperable and curated metadata, which can be integrated with other omics data, is a key requirement for understanding the complexity of spatiotemporal patterns of pathogen and ARGs transmission between humans, animals and the environment.
The ABRomics project aims to develop a secure One Health, online platform to make bacterial (meta)genomics data and their associated clinical and epidemiological metadata accessible to a meta-network of researchers including epidemiologists, clinical microbiologists and the wider research community. It should provide the diverse communities with a user-friendly platform to store, share and analyze genomic information together with their metadata. It will also serve as a data brokering hub to ease the submission of data sequences into international repositories.
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abromics_jobim2022_4.0.pdf
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