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Published June 26, 2022 | Version 0.2.0
Software Open

D-SCRIPT

Authors/Creators

Description

Topsy-Turvy Integration
  • Integrate Topsy-Turvy to allow for top-down supervision
  • See the GitHub repository
  • See the landing page
  • To appear at ISMB 2022 and in Bioinformatics as Devkota*, Singh*, Sledzieski, Berger, Cowen, "Topsy-Turvy: integrating a global view into sequence-based PPI prediction"
Bug Fixes and Quality of Life
  • Use utils.log function across all commands
  • Speed up loading embeddings into memory using parallel processing
  • Update fasta.parse and fasta.write to use BioPython SeqIO (better error checking)
  • More comprehensive test suite for main commands

Notes

If you use this software, please cite it as below.

Files

samsledje/D-SCRIPT-v0.2.0.zip

Files (22.4 MB)

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md5:90bbe6ab0b69799cc8c7971abeec736b
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Additional details

Related works

Is supplement to
https://github.com/samsledje/D-SCRIPT/tree/v0.2.0 (URL)