Published June 21, 2022
| Version 1.1.0
Dataset
Open
PRJNA516678 gVCFs
Authors/Creators
- 1. University of the Basque Country
- 2. University of Edinburgh
- 3. Beebytes Analytics CIC
- 4. INRAE Toulouse
Description
Sequencing reads were aligned to the Amel_HAv3.1 reference genome using BWA-MEM v0.7.17. Reads were sorted with SAMtools v1.9 and duplicates marked (MarkDuplicates) with GATK v4.0.11.0. Variants for each sample were called using GATK’s HaplotypeCaller with the following non-default parameters --ERC GVCF, --sample-ploidy 1 and -A AlleleFraction. This dataset comprises the gVCF files for samples belonging to project accession: PRJNA516678.
Files
Files
(36.7 GB)
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123.0 MB | Download |
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md5:d707d22cd2c0c93709eab40207337707
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23.0 kB | Download |
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md5:38b8dcc7bc5220644f663f2b3be89594
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283.0 MB | Download |
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md5:955acaab7d2e30a7483c68668149d285
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32.9 kB | Download |
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md5:e575761724aefab0c0fb0c9e56536c39
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273.4 MB | Download |
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md5:39f829995b1226a6767942b1f8a79446
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32.5 kB | Download |
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md5:cf1a4d89911dfbc6aeb825eb2a47d498
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132.2 MB | Download |
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md5:9c332c63c6c47eb527b0491a3f3fa57b
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24.2 kB | Download |
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md5:00c61785c25a5ab17897d338eeac0e2f
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119.0 MB | Download |
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md5:636d0a5ff3c9e8455a245b69a4654d5f
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23.6 kB | Download |
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md5:5bea42c8b8c7a283b14273cc2a4b5da2
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129.8 MB | Download |
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md5:d74b6238c92310122ef0c6ecfeebbb35
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23.6 kB | Download |
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md5:5324326333abce3c2dfd93614574fe19
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172.7 MB | Download |
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md5:e4c3d06b21aad50e56118e8e214248ca
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28.0 kB | Download |
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md5:d4af27de58f36c28faad875dd1106ac9
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144.2 MB | Download |
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md5:8ae2d99b2b45d19e3f3cb0285b066c94
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25.7 kB | Download |
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md5:90e78530848f33f3e786007ade508079
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134.3 MB | Download |
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md5:24c03618f3599a435e8f118da0df2d2e
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24.4 kB | Download |
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md5:c7c1e446a5e00ffe56334c9fa75d7ad7
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163.6 MB | Download |
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md5:13ef08d77c13db765aa0200dedf9150f
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27.3 kB | Download |
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md5:ca1002c0a29d442350fdac4e4e812ef6
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123.4 MB | Download |
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md5:23687ae63ec5dabf73f0f594715e66ab
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22.8 kB | Download |
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md5:35db21eee8aa9cbf548c563d81f2dec3
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138.4 MB | Download |
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md5:386aa90c3b3f0ae1ecb1d4303401acf7
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24.9 kB | Download |
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md5:4166fce1b056bce32760bc823547e0b4
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132.0 MB | Download |
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md5:8933047fc38b56479f49470919566986
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23.8 kB | Download |
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md5:6d2642507effa20d7d1eaf50a4698603
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120.2 MB | Download |
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md5:a9f65536cddea3c913e0636dccde16e7
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22.4 kB | Download |
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md5:f61e7591854c676cb74409797bdccf43
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171.8 MB | Download |
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md5:64ea8133b460111c07c8c606b8aac2a7
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28.6 kB | Download |
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md5:283146b184d9b0936ece8fd6301218e8
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220.9 MB | Download |
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md5:3fc03bec3291bf51e7d1ed485b953bec
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30.7 kB | Download |
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md5:b1fa6cf4540086799b37d59cb114934a
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120.4 MB | Download |
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md5:557ff5112e85455ca1872c76404294dd
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24.5 kB | Download |
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md5:258be90092dece704eaa32a112a6675e
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117.0 MB | Download |
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md5:88501fb44b8557159ccdec341f0967a4
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21.8 kB | Download |
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md5:0b8c45271c3b3130cbf5886599d63b70
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319.2 MB | Download |
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md5:150761fe75ea928970e1ce7cf3498d36
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32.8 kB | Download |
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md5:56922671ef95168c552d51d56c59fe74
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258.3 MB | Download |
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md5:ed8f839e46ee6ea89205b0536bb6c1e7
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32.9 kB | Download |
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md5:23665773e6a67744a38beb8a62fc9ed8
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234.3 MB | Download |
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md5:79a5a8c620e2cb95fd8f2210660159d1
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31.7 kB | Download |
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md5:2f105c3e0394d8215499f1fe51be5b78
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298.7 MB | Download |
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md5:906221568647d88c2c79e1298f87e53c
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32.8 kB | Download |
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md5:cec02d26f3be6b75b32dfd1ec8f9d620
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175.1 MB | Download |
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md5:84674e14baa7d5252fc1f98d0e4dc90f
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30.3 kB | Download |
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md5:9c3e705e6a97557073f608b8e8d8a1fb
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212.0 MB | Download |
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md5:38e1faf22d79827b6aadb2dd0fccf97b
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33.1 kB | Download |
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md5:305418303ac853ff1a40a6434d689cf7
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132.6 MB | Download |
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md5:b20e49821571925d4d3699c40522a8ec
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24.9 kB | Download |
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md5:b1cbef727768103c6814829ee46a5471
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273.8 MB | Download |
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md5:05aed0f97d682ebc6afbb84706b39e54
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32.8 kB | Download |
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md5:cb323e45642034d3bb92c5a031df9a4c
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116.8 MB | Download |
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md5:11426d7a6e5b0f24cb86ef7946e72603
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23.0 kB | Download |
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md5:571b15734028eb3ece0b2bff898cfc15
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113.1 MB | Download |
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md5:ec0485d8004d05d998036ea6e22d8e98
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21.2 kB | Download |
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md5:6f40e05c28bfbe428004d8da4e9995be
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154.4 MB | Download |
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md5:1f16302e07ccdf2449385d9e4c10684d
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26.9 kB | Download |
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md5:e948b7280a84df7116ce0147b2b09192
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121.4 MB | Download |
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md5:a3ae27cb4790d0988bfd2279697cbbbb
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22.8 kB | Download |
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md5:d7195a4431bde45bf736ef7d46b079f7
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139.1 MB | Download |
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md5:6b3859bc96ffd66a17c1a475addb2875
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29.1 kB | Download |
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md5:c21d5f643a22ecd70780a5dcdd986b05
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166.7 MB | Download |
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md5:fcf81057b24cfde6bd5863a746fef230
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27.7 kB | Download |
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md5:41c9ccb07e8ccabf45fbaaaed6a496bb
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168.2 MB | Download |
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md5:806c7c3a500b3c78bce6a727ebf5be41
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28.2 kB | Download |
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md5:bb0e3b84492a1c8c5fa3164f85de28f9
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181.9 MB | Download |
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md5:225fb027cbebe98e17a44c5b9fb5bef8
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33.0 kB | Download |
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md5:2ec13d1149233c0fd319ab7dd795e6b2
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183.2 MB | Download |
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md5:179bc5d0c443a59a7e320bd61fcf5335
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31.6 kB | Download |
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md5:e5ebd16a02054da95355f6e53eb784ad
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170.8 MB | Download |
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md5:c7526d3ff248fdf9427adc786e79260a
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29.0 kB | Download |
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md5:de985cd224ab9b0e91e58e5155e8416e
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160.3 MB | Download |
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md5:17db8b0e02810c24785eb29bb308124f
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29.1 kB | Download |
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md5:aa8d594a9b6302cea8a7ce74199a016b
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200.3 MB | Download |
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md5:da66687530b07400d3a39ccb23dcfce2
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32.9 kB | Download |
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md5:c83b4bddad90801df3db68ccde6082e1
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117.3 MB | Download |
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md5:528e63e3b4a520e7a6aa36df9d54445e
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23.2 kB | Download |
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md5:b1de296ae008b5a170d53dd5ecd83c84
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154.9 MB | Download |
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md5:a79151bceb5d07d3ddfcca4f3ff367a9
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27.8 kB | Download |
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md5:603217df87adf74ccb15b5d350638ce1
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245.5 MB | Download |
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md5:70b056db32755462975bca51e3f1bd2d
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30.5 kB | Download |
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md5:11b47dfbff2254a6cb08866d2a9ae80b
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263.0 MB | Download |
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md5:c00e369b5b65184c54882438c182fe50
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32.2 kB | Download |
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md5:f15dbaa3799e3c7de1d1f0eeef30462a
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264.9 MB | Download |
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md5:a65eca1601a30e4b2f9813f31e7a3b87
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32.9 kB | Download |
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md5:432807f320434ee39837390d6c1ec731
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126.5 MB | Download |
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md5:ecc27e91688054993b1c8a4e9f3ef758
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26.0 kB | Download |
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md5:0b8172925dcd72c5616dfaa492497aee
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213.9 MB | Download |
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md5:6fc034960ae38618ff0beefe3592761f
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30.7 kB | Download |
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md5:b37fd0e53eeb5a60f183b9a5198ef2f1
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235.3 MB | Download |
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md5:97da9e0de18d460c6d70f10c3b7001dd
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32.8 kB | Download |
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md5:9dce668fea8d5670a098917a857e041f
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220.5 MB | Download |
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md5:e4ab49545e1a859adb3f1bfb8a6a2dbe
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31.6 kB | Download |
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md5:25aba87dc3ff49ea17d0bdbec8ec376d
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267.8 MB | Download |
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md5:2a4f46a17d6c9b25d6039688702bf5ea
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31.5 kB | Download |
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md5:a33c44828f7c78890c903c611688b45f
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196.5 MB | Download |
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md5:f40d90d61d90dbe7d708b330ced99d91
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30.3 kB | Download |
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md5:e43b03df1d052cf80ff444d52cfb094e
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102.7 MB | Download |
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md5:04dd99792db69f14bda9178d7f04b555
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18.4 kB | Download |
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md5:995b797c891b146f7ffc7bf3396ba9bf
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136.7 MB | Download |
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md5:f235b09e70a4c397734507fd4f2407ce
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27.5 kB | Download |
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md5:f5d4f1a9856297632a7f94f8326981b6
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224.6 MB | Download |
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md5:75f8350d5171ae3028d2169349e9f3fb
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32.4 kB | Download |
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md5:bb60065663bb71ba73cba647f3ce5f38
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160.1 MB | Download |
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md5:8326510fb4200c77623ba9dfe729359b
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26.7 kB | Download |
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md5:cdf705e28ccf0291878b08839842028b
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144.3 MB | Download |
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md5:b26d0d078b0c77536443ad1e6f7a1314
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26.4 kB | Download |
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md5:3a8dd6b2a14e2ac127d347a506b6abb1
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157.0 MB | Download |
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md5:8133f74c3a964a579e706cae0b19e0e5
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26.6 kB | Download |
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md5:1c1615bd7d9ce28f9b58bb7da25a84f5
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292.7 MB | Download |
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md5:2351d4963421ffcb5c30be1b36c0d076
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32.7 kB | Download |
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md5:56591fce84e98f39e9a1eedc24cc2d24
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269.4 MB | Download |
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md5:0d60e9d1f1aee3a75d316a1fcc8bf9e4
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31.8 kB | Download |
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md5:b4576793687725822b1315183d7e771b
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208.1 MB | Download |
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md5:8fd6c15841cd6cc2217eb4091d51dbe8
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31.0 kB | Download |
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md5:94047ceaa2ccdd97a20700b7d4fb76c8
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184.0 MB | Download |
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md5:540dcbb30cee1d1f644e2c31e19283e4
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29.4 kB | Download |
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md5:576ef4a9ad58238412532737716b09bd
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331.0 MB | Download |
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md5:d7e99b5bfc4ca497429765f7160a3265
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32.6 kB | Download |
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md5:7b1716271e09d5563d045eafb46eea59
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290.6 MB | Download |
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md5:403714792c4031c39f35164d864f3ac2
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32.8 kB | Download |
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md5:e6ce9e9f091c3780d7c5f55d93216125
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126.0 MB | Download |
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md5:6bc8ff35b6af95e808cc46fd941959bd
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25.9 kB | Download |
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md5:80aa6221c2c9b40e6b31db8053df10a0
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248.1 MB | Download |
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md5:517e1a0d9101eca646bcb1054f5fc358
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32.8 kB | Download |
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md5:2f569be722dc18e5fedf4eda914c70b5
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267.4 MB | Download |
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md5:e66093322f48a5b86fbdaaafdc0a68f4
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32.7 kB | Download |
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md5:b634ed3c461761817455723cb0c2af4c
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136.8 MB | Download |
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md5:b15140ce9a2b09e52acda33638737830
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25.3 kB | Download |
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md5:109ea4691a9ab32809ff7fa8e1ebad85
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209.6 MB | Download |
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md5:eb15cd67e85a3d40922d0b589d5a093d
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31.0 kB | Download |
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md5:1d396a1a1cc69143378c187d06ebd918
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164.7 MB | Download |
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md5:028e53a5fbba5b0acd3ea3f037ede034
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27.4 kB | Download |
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md5:334b593f1f63486f17d6f7867d887881
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181.0 MB | Download |
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md5:c7a1e6300eb9553ee5d630bb4cfda579
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29.9 kB | Download |
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md5:cf6600c69c46d136b6b81ea566fe6bad
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106.5 MB | Download |
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md5:7b0ff5bc2ffc8ed698962c83944b45bd
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20.3 kB | Download |
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md5:14be2d07166a87b59448934b86e69e5e
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132.8 MB | Download |
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md5:211f39bc69bdd97704ece1745f5df494
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25.0 kB | Download |
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md5:222904797210e99352705459c2e377fe
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96.3 MB | Download |
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md5:1b9c751d39c4e76c9720779fa0cdfd3a
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18.1 kB | Download |
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md5:39f380d501e5dc87bcdece00aff67112
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122.3 MB | Download |
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md5:dacf26ad0a8338333edc824b1c0a7e3d
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25.1 kB | Download |
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md5:33726b1cea4ff34038b1b1418acadb9c
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204.9 MB | Download |
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md5:5610e02684ecc7a6d7da2a767fa7fc51
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30.1 kB | Download |
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md5:bd03b2455d085cd8bbc00d8d1b4d036f
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161.9 MB | Download |
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md5:ed5c806ff9d98a4bbd1ea8cb11ddbb2b
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28.3 kB | Download |
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md5:62eab865f2c49b7332ff6eceb5fd1e56
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135.8 MB | Download |
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md5:b77275241e56a463d0dbb490d27a45ec
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24.4 kB | Download |
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md5:95b7d2fdbc4c6719a763da1d7800e28c
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168.3 MB | Download |
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md5:11ef19abdd7efab3e49b675da449624c
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28.4 kB | Download |
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md5:9d245868477721207ccf6e875458687e
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89.6 MB | Download |
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md5:f16274ec5d906d8db922f37096d5f66a
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16.8 kB | Download |
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md5:54f747b7f6feab9ddfa23889b725181c
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156.6 MB | Download |
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md5:7fb0d8cbd001eaa0f6d4bfebc758b9f3
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27.4 kB | Download |
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md5:de89ebc48edac11964e0a9a3a5303c3f
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119.6 MB | Download |
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md5:42be3d8cb367124736e08fc3c3b027fc
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22.0 kB | Download |
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md5:00c9c8f03024c7276d6c93aae92ab629
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232.3 MB | Download |
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md5:820ad7536a0474314109920a0de71373
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30.7 kB | Download |
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md5:90a316353be0986a2999c2232acad048
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104.6 MB | Download |
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md5:5249110200bb432e6edabec9c871194f
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19.3 kB | Download |
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md5:175d888a1e9600a0fdc97c9c432d00e1
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139.2 MB | Download |
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md5:af3dd2e1d0c002e00ea8604bfbb3c732
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28.7 kB | Download |
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md5:67701bcc3c89b5ffacbc943d7aae5cff
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146.8 MB | Download |
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md5:e6d9449bce21ba2f4c1b335151eea5de
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25.9 kB | Download |
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md5:abd3670f9425e9e90360b765ebe2cf69
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222.3 MB | Download |
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md5:1de0e7244085dbda8f21b3d3175c26bb
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31.1 kB | Download |
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md5:5cc335d0d521dbb75c1cd2c5b9092b80
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119.6 MB | Download |
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md5:d4550b16ba114c1fde0496cc4c875256
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24.0 kB | Download |
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md5:9577a645144c2941a373a1bf07fba7f2
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123.5 MB | Download |
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md5:4a93405308b31ed72d979671a76bf7ff
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22.7 kB | Download |
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md5:b8ac3b345805232b6fdec3740951053c
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166.5 MB | Download |
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md5:ef363a8ce3cdd1a663e3b5fa308d1edd
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28.4 kB | Download |
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md5:a26cbb785edd58ae0ec2014adba6dfbb
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170.9 MB | Download |
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md5:0e88dc08f65cc670f1d40eef0cbf548a
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28.7 kB | Download |
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md5:65ba98c82152066d33ebd5b762a32492
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124.7 MB | Download |
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md5:347324160ea254e72a012eb242b03ed8
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23.2 kB | Download |
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md5:92361d3d97c2ded6814b3dadcedd57e2
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154.1 MB | Download |
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md5:b5132a08f5abdca7a7cb7c7415f1a208
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26.5 kB | Download |
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md5:3d38e2ece937cd2fb6c044c8653ceae8
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193.0 MB | Download |
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md5:85c7ae994e465ae9c5039fab8f8bf693
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30.7 kB | Download |
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md5:0001230d26d42df04d93e063bab920f8
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161.9 MB | Download |
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md5:39fe17763943f44fa253ec10d9fdc5b4
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28.1 kB | Download |
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md5:61485bb789e14864183b4a2244fede65
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171.0 MB | Download |
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md5:718545cd3ad25ddef317b18eac6dcd3c
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28.1 kB | Download |
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md5:6304df6bc8e7fa98f8b3604e7137b105
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134.0 MB | Download |
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md5:76c114f8c82a5fc0b0200c82b5b0cf03
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24.3 kB | Download |
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md5:cb49c8dcc69d88d021a737b6086ecfe6
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120.0 MB | Download |
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md5:f383c4e40b932e61f1f79269f08f0bbe
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24.0 kB | Download |
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md5:b1245462721771a8519a96f025e3fdd7
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283.7 MB | Download |
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md5:9e1ea068d9040171564932570ee474bb
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33.0 kB | Download |
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md5:afc763f62625954e11f15acd07a1ffb7
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197.5 MB | Download |
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md5:3e3e4c8fb8f3a012c3455e7d17ef292b
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30.3 kB | Download |
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md5:9dc7d600aebcc5c1ef0c3cc624ffd626
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227.9 MB | Download |
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md5:4da68afb2828b91a9206712c298e5b18
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29.8 kB | Download |
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md5:2f80008fda63ee725b93d7644a18f266
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235.8 MB | Download |
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md5:eb84a6328720482e9b93b49fd644c2ce
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30.8 kB | Download |
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md5:172afbfbcd1212d4c9b9d14111fbbff4
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114.6 MB | Download |
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md5:345f8da1ec830cc1c364ba454d018872
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21.5 kB | Download |
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md5:870369f7783ecff1fa9d751a798fa1e7
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102.4 MB | Download |
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md5:b9243a2d119b4b9348494fdc891145a5
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19.5 kB | Download |
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md5:422b48cec430ad3b882c1f5efed6df42
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154.4 MB | Download |
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md5:a7528e0a892909e43f9d39057e321d55
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26.1 kB | Download |
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md5:9626ec73f1a3c607348af3fdd7cf5570
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200.4 MB | Download |
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md5:55dfaffbcd8ce0e8b9e676b67927e537
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28.7 kB | Download |
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md5:c78c7e3c3c8af64700005d491bc3a1e9
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158.2 MB | Download |
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md5:b9eb48d3bda0910a79099f5904f17d45
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26.6 kB | Download |
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md5:de796fb4b7542632186b1665435cbe8f
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123.3 MB | Download |
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md5:29407e3d51963c2db387afc8c33a62ca
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25.2 kB | Download |
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md5:9fcbcdbde3deb336427898f00d9b9663
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120.5 MB | Download |
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md5:9759b55190245ed96cbc23170e8b0e1a
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22.0 kB | Download |
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md5:7a23b1378b82f4040e824ccea0db7fa5
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118.3 MB | Download |
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md5:78e8f9cece0ab75cd07fc357e2cb892c
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22.3 kB | Download |
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md5:c930e715eed9b122b577ee19becb7beb
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168.8 MB | Download |
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md5:e15fefcad358a770d57191072d7f2ed9
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27.7 kB | Download |
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md5:a4a9a8691df640be65570a0f8286eea1
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129.2 MB | Download |
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md5:2bcb996a5cb7ca209532253c353c17a9
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23.4 kB | Download |
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md5:016a0977bdd0639a44b2948a67cfc55a
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123.7 MB | Download |
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md5:7c0ecfcf30ca0a28714261a0a038b00b
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22.4 kB | Download |
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md5:7339a77403d84dbfb5f06a330ad07bc0
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269.8 MB | Download |
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md5:9dcd2eac33812b313cf820d769e327c0
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32.9 kB | Download |
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md5:6566873026bb4b7f710587d107dfca0a
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304.2 MB | Download |
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md5:dbd54739331b33c05d919f4c028060ec
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32.6 kB | Download |
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md5:5f73e958ba62efee5b9c4514c351816a
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149.9 MB | Download |
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md5:c1505a22dd491e552eb196e52f608383
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25.7 kB | Download |
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md5:5eb12a918eba34c290e2657ce53ede3b
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283.9 MB | Download |
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md5:41aad0a726fe670ea48de9ec5be26151
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32.2 kB | Download |
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md5:51ce7217cceb74ca68d501f8650b894f
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228.0 MB | Download |
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md5:e192c256cf4678b732c537116ded7b70
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31.1 kB | Download |
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md5:7bf7a8717dd2d4f66ba252d18cd8f7e2
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229.1 MB | Download |
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md5:e370a5c53c8fdec3c043626aa0cc5316
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30.2 kB | Download |