Simulated Tomograms used for TomoTwin

Simulated Training Tomograms for the TomoTwin particle picking procedure.

It contains 8 sets:  7 simulation named tomo_simulation_round_X and 1 generalization tomogram named tomo_simulation_gen.

The folder structure is as follows:

• files_filament: PDB and configuration file for adding actin filaments to the tomogram
• pdbs: Particle PDBs used for simulation.
• tomo_NUMBER_TIMESTAMP: Tomogram folders. Each folder contains
  • tiltseries_rec.mrc: The reconstruction
  • coords: .coord files with coordinates of the individual proteins.

All tomograms where simulated using the TEM-Simulator-Scripts. The command looked like this:

tsimscripts_pipe.sh --pdbs pdbs/*.pdb --npdbs 150 --output out/tomo_01/ --pdbs_fil files_filament/*.pdb --settings_fil files_filament/*.json --nsubs 100