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Published June 30, 2021 | Version 0.1.4
Software Open

Tsdate

Creators

Description

Changelog:

  • Added the time_units parameter to tsdate.date, allowing users to specify the time units of the dated tree sequence. Default is "generations".

  • Added the return_posteriors parameter to tsdate.date. If True, the function returns a tuple of (dated_ts, posteriors).

  • mutation_rate is now a required argument in tsdate.date and tsdate.get_dates

  • tsdate returns an error if users attempt to date an unsimplified tree sequence.

  • Updated tsdate citation information to cite the recent Science paper

  • Support for Python 3.10

Notes

If you use tsdate in your work, please cite it as below.

Files

tskit-dev/tsdate-0.1.5.zip

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Additional details

Related works

Is supplement to
https://github.com/tskit-dev/tsdate/tree/0.1.5 (URL)