Published June 8, 2022
| Version v1
Dataset
Open
Datasets used for the performance evaluation of kataegis detection tools
Description
These two datasets were used for the performance evaluation of katdetectr and other publicly available kataegis detection tools (link to paper, not yet published).
The synthetic data was generated using the generateSyntheticData function from the katdetectr package (https://github.com/ErasmusMC-CCBC/katdetectr).
The scripts that generate the synthetic data, and import and process the Alexandrov et al. dataset can be found on GitHub at: https://github.com/ErasmusMC-CCBC/evaluation_katdetectr.
Files
alexandrov_data_processed_katdetectr_evaluation.csv.zip
Files
(264.5 MB)
| Name | Size | Download all |
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md5:ec311e2e2fbf8a32ddfeb8ecb0b22008
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38.8 MB | Preview Download |
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md5:de279a8a6a4bf6f2841b9d8f00e9956f
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225.7 MB | Preview Download |
Additional details
References
- Alexandrov LB, Nik-Zainal S, Wedge DC, Aparicio SA, Behjati S, Biankin AV, Bignell GR, Bolli N, Borg A, Børresen-Dale AL, Boyault S. Signatures of mutational processes in human cancer. Nature. 2013 Aug;500(7463):415-21.