Published June 5, 2022
| Version v0.27.0
Software
Open
lczech/genesis: genesis v0.27.0
Authors/Creators
- 1. Carnegie Institution for Science
- 2. Freelance
- 3. Cirad
Description
Notable Changes
- Refactor Variant Input Iterators for ease of use
- Add Variant Input Iterator for Parallel Input
- Add SAM/BAM/CRAM Input Iterator, with RG read group splitting and filtering, and SAM flags filters
- Refactor Genome Region List to use Interval Tree, and add surrounding functionality
- Rename and refactor Kofler and Karlsson F_ST pool functions for clarity
- Add our unbiased F_ST estimators for pool sequencing data
- Refactor and refine diversity measure settings
- Refactor Window Iterator
- Non-virtual iterator interface
- Base class abstraction for SlidingWindowIterator
- Deprecate SlidingWindowGenerater, use SlidingWindowIterator instead
- Deprecate Vcf Window Generator function
- Add BED Reader
- Add Genome Region List reader for GFF
- Speed improvements and async block buffering for Lambda Iterator
- Refine CMake setup for htslib, improve autotools combatibility
Files
lczech/genesis-v0.27.0.zip
Files
(5.8 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:91eb3dc68030ed7bf3676679f38b6b18
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5.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/lczech/genesis/tree/v0.27.0 (URL)