Published May 25, 2022 | Version v1
Dataset Open

dynseq tracks data

Authors/Creators

  • 1. Surag
  • 2. Arjun
  • 3. Daofeng
  • 4. Brian
  • 5. Peter
  • 6. Vivekanandan
  • 7. Anusri
  • 8. Fritz
  • 9. Ting
  • 10. Maximilian
  • 11. Anshul

Description

This record contains data and models relevant to the manuscript on dynamic sequence (dynseq) genome browser tracks. See https://github.com/kundajelab/dynseq-paper for more information.

It contains data for 2 vignettes:

1) beta globin: observed data for relevant experiments (bigwig), BPNet model TF/keras (h5) files trained on those experiments, predicted data from the models (bigwig) and importance scores (bigwig) from the models.

2) SPI1 variant analysis: BPNet model TF/keras (h5) files trained GM12878 ATAC-seq and SPI1 ChIP-seq in GM12878 (ENCSR000BGQ), predicted data from the models (bigwig) and importance scores (bigwig) from the models for ref and alt alleles at rs5764238.

Files

Files (5.2 GB)

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md5:d28d2691bfd136696e2c4493eb1d2323
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