Appendix attachments for MSc thesis report
Contributors
- 1. Karolinska Institutet
Description
Image Acquisition protocol
‘compressedFISH ROBOFISH job.ipynb’
Image Processing - Cell segmentation and compressed sensing pipeline
‘’imagedata.py”
“ImageAnalysis_testing.ipynb”
extra files for imagedata.py to work:
stitcher.py
Output files:
polygons.pkl
map_from_centroid_to_average.pkl
average_intensities.pkl
Other attachments in Zenodo:
|
Exp name |
‘16-gene’ pilot exp |
‘167-gene’ exp at 40X and 60X |
‘167-gene’ exp at 20X |
|
Amplifiers used |
CompositeAmplifiers.xlsx |
||
|
Genes targeted |
codebook_composite_test_High.xlsx |
167genes_MouseBrain.xlsx MouseGeneSelection.txt |
|
|
Exp logs |
ROBOFISH log FLEXP2022-02-08 amplifier test.txt ROBOFISH log FLEXP2022-02-17.txt |
ROBOFISH log FLEXP2022-04-22.txt |
ROBOFISH log FLEXP2022-04-15.txt |
Table 2. List of each experiment’s respective attachments, as stored in Zenodo.
Files
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Access granted only to Expert Examiner and Peer Opponent, alongside the thesis course coordinators. If you are one of those 4 people, please request access and I will approve it asap. Otherwise, my research group doesn't want this work to be made public yet. Thank you!
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