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Published May 16, 2022 | Version 0.1.1
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Single-cell information extracted from IMC example data

  • 1. University of Zurich

Description

This repository contains additional information related to IMC example data available at zenodo.org/record/5949116. The following files are available:

  • gated_cells.zip: contains SpatialExperiment objects storing cells that were manually gated based on their expression values to derive ground truth cell phenotype labels. 

Files

gated_cells.zip

Files (63.0 MB)

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md5:ccb8bf073badcbc3fc9ad1bde5449550
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Additional details

Related works

Is derived from
Dataset: 10.5281/zenodo.5949116 (DOI)
Dataset: 10.5281/zenodo.6460961 (DOI)

Funding

European Commission
SpatialOrganoids - Profiling the emergence of phenotypic heterogeneity in breast cancer organoids 892225