Published May 12, 2022 | Version v1
Dataset Open

Data from: The shape of aroma: Measuring and modeling citrus oil gland distribution

  • 1. Michigan State University
  • 2. Utrecht University
  • 3. University of California, Riverside

Description

From preventing scurvy to being part of religious rituals, citrus are intrinsically connected to human health and perception. From tiny mandarins to head-sized pummelos, citrus capability of hybridization provides a vastly diverse array of fruit sizes and shapes, which in turn corresponds to a diversity of flavors and aromas. These sensory qualities are tightly linked to oil glands in the citrus skin. The oil glands are also key to understanding fruit development, and the essential oils contained by them are fundamental in the food and perfume industries. We study the shape of citrus based on 3D X-ray CT scan reconstruction of 163 different citrus samples comprising 58 different species and cultivars, including samples of all fundamental citrus species. First, using the power of X-rays and image processing, we are able to compare and contrast size ratios between different tissues, such as the size of the skin compared to the rind or the flesh. Second, we model the fruit shape as an ellipsoidal surface, and later we study and infer possible oil gland distributions on this surface using principles of directional statistics. We finally compare and contrast these overall fruit shape models along their gland distributions across different citrus species. This morphological modeling will allow us later to link genotype with phenotype, furthering our insight on how the physical shape is genetically specified in DNA.

Notes

All the scans are provided as single 3D 8-bit TIFF files which can be manipulated as 3D arrays. Point clouds representing the center of citrus oil glands are attached as well. These point clouds can be later used to model the whole fruit shape.

Please read the README files included with the data for more details.

Funding provided by: National Institute of Food and Agriculture
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100005825
Award Number:

Funding provided by: AgBioResearch, Michigan State University
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100011138
Award Number:

Funding provided by: National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001
Award Number: CCF-1907591

Funding provided by: National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001
Award Number: CCF-2106578

Funding provided by: National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001
Award Number: CCF-2142713

Funding provided by: University of California, Riverside
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100007602
Award Number:

Funding provided by: Michigan State University
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100007709
Award Number:

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