Published May 7, 2022
| Version 1.1.0
Software
Open
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics
Description
- Bump version: 1.0.1 → 1.1.0
- Updates AUTHORS.md
- Adds DICOM support.
- Updates license to more permissive BSD 3-clause.
- Adds MicroNet model.
- Improves support for
tifffiles.- Adds a check for tiles in a TIFF file when opening.
- Uses OpenSlide to read a TIFF if it has tiles instead of OpenCV (VirtualWSIReader).
- Adds a fallback to tifffile if it is tiled but openslide cannot read it (e.g. jp2k or jpegxl tiles).
- Adds support for multi-channel images (HxWxC).
- Fixes performance issues in
semantic_segmentor.py.- Performance gain measurement: 21.67s (new) vs 45.564 (old) using a 4k x 4k WSI.
- External Contribution from @ByteHexler.
- Adds benchmark for Annotations Store.
- None
- Enhances the error messages to be more informative.
- Fixes Flake8 Errors, typos.
- Fixes patch predictor models based after fixing a typo.
- Bug fixes in Graph functions.
- Adds documentation for docker support.
- General tidying up of docstrings.
- Adds metrics to readthedocs/docstrings for pretrained models.
- Adds
pydicomandwsidicomas dependency. - Updates dependencies.
- Fixes Travis detection and makes improvements to run tests faster on Travis.
- Adds Dependabot to automatically update dependencies.
- Improves CLI definitions to make it easier to integrate new functions.
- Fixes compile options for test_annotation_stores.py
Notes
If you use this software, please cite it as below.
Files
TissueImageAnalytics/tiatoolbox-v1.1.0.zip
Files
(59.6 MB)
| Name | Size | Download all |
|---|---|---|
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md5:2ae0ebb5919db8ae549832d87df4506c
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59.6 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/TissueImageAnalytics/tiatoolbox/tree/v1.1.0 (URL)