Published May 4, 2022
| Version v1
Journal article
Open
Bionano Solve outputs (PT2) for: Optical mapping compendium of structural variants across global cattle breeds
Authors/Creators
-
Talenti, Andrea1
- Powell, Jessica1
- Wragg, David1
- Chepkwony, Maureen2
- Fisch, Andressa3
- Ferreira, Beatriz3
- Mercadante, Maria4
- Santos, Isabel5
- Eseazor, Chukwunonso6
- Obishakin, Emmanuel7
- Muhanguzi, Dennis8
- Amanyire, Wilson8
- Silwamba, Isaac9
- Muma, John10
- Mainda, Geoffrey11
- Kelly, Rob12
- Toye, Phil2
- Connelley, Tim1
- Prendergast, James1
- 1. The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, United Kingdom
- 2. The International Livestock Research Institute, PO Box 30709, Nairobi, Kenya
- 3. Ribeirão Preto College of Nursing, University of Sao Paulo, Ribeirão Preto, SP, Brazil
- 4. Institute of Animal Science, Agriculture Department of São Paulo Government, Sertãozinho, SP, 14.174-000, Brazil
- 5. Ribeirão Preto School of Medicine, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
- 6. Department of Veterinary Pathology and Microbiology, University of Nigeria, Nsukka. Enugu State, Nigeria
- 7. Biotechnology Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria.
- 8. School of Biosecurity, Biotechnology and Laboratory Sciences (SBLS), College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, P.O Box 7062, Kampala, Uganda
- 9. Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O BOX 32379, Lusaka, Zambia
- 10. Department of Laboratory and Diagnostics, Livestock Services Cooperative Society, P.O. BOX 32025, Lusaka, Zambia
- 11. Department of Veterinary Services, Ministry of Fisheries and Livestock, Central Veterinary Research Institute, P.O. Box 33980, Lusaka, Zambia
- 12. Royal (Dick) School of Veterinary Studies, University of Edinburgh, Roslin, UK
Description
Bionano solve pipeline output for 8 cattle of 4 different breeds (Holstein-Friesian, N'Dama, White Fulani, Nelore) described in Talenti et al. The output can be imported in the Bionano Access software to visualize, filter and export the SVs.
Files
chunk2.zip
Additional details
Funding
- UK Research and Innovation
- Prediction of genes and regulatory elements in farm animal genomes BBS/E/D/10002070
- UK Research and Innovation
- GCRF-BBR: A compendium of structural variation across African cattle breeds BB/R015155/1