Published April 29, 2022
| Version 1
Dataset
Open
REPIN population analysis in 49 Stenotrophomonas maltophilia genomes
Authors/Creators
- 1. Christian Albrechts Universitaet Kiel
- 2. Max Planck Institute for Evolutionary Biology
- 3. Max Planck Institute for Evolutionary Bi
Description
This dataset contains the genome sequences of 49 S. maltophilia strains (input.zip) and the processed data from four individual RAREFAN runs. RAREFAN identifies RAYTs REPINS for each supplied genome and a reference genome. Four different strains where used as a reference genome: AA1, AB550 FDARGOOS_649, ISMMS3, and Sm53. The data were processed with default RAREFAN job parameters. Links to the original RAREFAN jobs are given below.
Files
AA1_out.zip
Files
(270.7 MB)
| Name | Size | |
|---|---|---|
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md5:92238b6bc8ba02e7aa85c9312283c054
|
42.1 MB | Preview Download |
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md5:f0020487648d0dfc1fd8a4d96d9e62c0
|
39.5 MB | Preview Download |
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md5:68a6ff4a41d786243b35d32dd89dafbe
|
40.0 MB | Preview Download |
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md5:ca9f088a1847b93bc54778ddfb2917a7
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68.9 MB | Preview Download |
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md5:4939eb8eb718235bd150e2e271522675
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40.7 MB | Preview Download |
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md5:0dabebe3700407e7898748e9a7aea158
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39.3 MB | Preview Download |
Additional details
Related works
- References
- Dataset: http://rarefan.evolbio.mpg.de/results?run_id=mknhxpv8 (URL)
- Dataset: http://rarefan.evolbio.mpg.de/results?run_id=yy72i755 (URL)
- Dataset: http://rarefan.evolbio.mpg.de/results?run_id=pgfmaxx5 (URL)
- Dataset: http://rarefan.evolbio.mpg.de/results?run_id=78eu9zl0 (URL)
- Journal article: 10.1093/gbe/evx146 (DOI)