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Published April 28, 2022 | Version v3.2.0
Software Open

SIRF-SuperBuild

Authors/Creators

  • 1. UK Research & Innovation
  • 2. University College London
  • 3. King's College London
  • 4. Commonwealth Scientific and Industrial Research Organisation, and University of Queensland
  • 5. Physikalisch-Technische Bundesanstalt (PTB)

Description

  • Moved the VM to this SuperBuild repo
  • CMake: removed USE_SYSTEM_siemens_to_ismrmrd
  • CMake: added required versions for STIR, NIFTYREG, ISMRMRD.
  • Drop Python 2 support
  • CMake minimum required version is set to 3.16.2, as it supports Boost 1.72
  • VirtualBox VM is created from the SIRF-SuperBuild repository
  • Docker images install CIL via conda, so setting BUILD_CIL=OFF in the docker build
  • Added jupyterhub Dockerfile and documentation to build the jupyterhub image used in training on top of SIRF docker images and jupyter datascience-notebook image with GPU access.
  • Adds Boost random for ISMRMRD 1.5.0 https://github.com/SyneRBI/SIRF-SuperBuild/issues/636
  • moved the VM repository to the VirtualBox subdirectory
  • fix usage of proj_EXTRA_CMAKE_ARGS facility (it was broken for all projects except ITK) https://github.com/SyneRBI/SIRF-SuperBuild/issues/616
  • Boost: fix cases where the wrong version of boost could be found https://github.com/SyneRBI/SIRF-SuperBuild/issues/627
  • GTest: if USE_SYSTEM_GTest=OFF, attempt to force finding our version, otherwise, pass GTest_DIR or GTEST_ROOT on to dependent projects.
  • add the CERN ROOT library (if USE_ROOT=ON, but defaults to OFF), which can be used by STIR to read GATE ROOT files.
  • updated versions:
    • CMake: 3.16.2
    • ISMRMRD: 1.7.0 if siemens_to_ismrmrd is built, 1.4.2.1 otherwise
    • siemens_to_ismrmrd: 6d0ab3d3d0c8ade5c0526db1c6af9825008425ad > 1.2.2 with bug-fix for boost/foreach.hpp
    • ITK: 5.2.1 However, we now build a smaller set of modules, most (but not all) of IO, and Filtering. See SuperBuild/External_ITK.cmake)
    • NiftyReg: 99d584e2b8ea0bffe7e65e40c8dc818751782d92 ) (fixes gcc-9 OpenMP problems)
    • CIL: v21.4.0
    • GTest: 1.11.0
    • Boost: 1.72.0
    • JSON: 3.10.4
    • ACE: 6.5.9
    • parallelproj: v0.8

Notes

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Files

SyneRBI/SIRF-SuperBuild-v3.2.0.zip

Files (207.3 kB)

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Additional details

Related works

Is supplement to
https://github.com/SyneRBI/SIRF-SuperBuild/tree/v3.2.0 (URL)