Published April 26, 2022
| Version v2022-04-26
Software
Open
kipoi/models: v2022-04-26
Authors/Creators
- Haimasree1
- Žiga Avsec
- Thorsten Beier2
- Florian R. Hölzlwimmer
- krrome
- Jun Cheng
- Jack Lanchantin3
- Bernardo P. de Almeida4
- Muhammed Hasan5
- LaraUrban
- Nancy Xu
- Travis Wrightsman
- Daniel Kim
- Johnny Israeli6
- Alex Karollus
- Anthony Gitter
- Ibrahim Taskiran
- Jeffrey Lemoine7
- Katrin Leinweber8
- Stefan
- Surag Nair9
- Vikram Agarwal10
- banwang27
- mheinzinger
- 1. EMBL
- 2. -
- 3. Facebook AI
- 4. Research Institute of Molecular Pathology (IMP)
- 5. UC Irvine
- 6. Nvidia
- 7. @PlexiumDev
- 8. @gitlabhq
- 9. Stanford University
- 10. Calico
Description
Announcement
This would be the last release with models with python=3.6. Most of the models (except KipoiSplice and SeqVec) will be upgraded to python 3.7 as python 3.6 has been EOL-ed. Although Kipoi still supports python=3.6, in future if that changes, kipoi version also must be pinned in model.yaml(s) in the remaining models.
What's Changed- Increased parallelism to avoid build timeout error by @haimasree in https://github.com/kipoi/models/pull/279
- Adding postprocessing back to maintain compatibiliy with kipoi-veff by @haimasree in https://github.com/kipoi/models/pull/281
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/282
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/283
- Remove postprocessing from DeepSEA by @haimasree in https://github.com/kipoi/models/pull/284
- Fix APARENT/site_probabilities output labels by @twrightsman in https://github.com/kipoi/models/pull/285
- Add more parallelism to avoid frequent circleci issue with context deadline by @haimasree in https://github.com/kipoi/models/pull/286
- Updated links to singularity containers by @haimasree in https://github.com/kipoi/models/pull/287
- Adding a way to sync with kipoi-containers by @haimasree in https://github.com/kipoi/models/pull/288
- Fix sync workflow by @haimasree in https://github.com/kipoi/models/pull/289
- Added DeepSTARR by @bernardo-de-almeida in https://github.com/kipoi/models/pull/290
- Adding precision for cross platform testing by @haimasree in https://github.com/kipoi/models/pull/291
- Adding DeepSTARR containers by @haimasree in https://github.com/kipoi/models/pull/292
- Adjust APARENT model by @Hoeze in https://github.com/kipoi/models/pull/293
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/294
- Removing ambiguity for model class definition by @haimasree in https://github.com/kipoi/models/pull/295
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/296
- Aparent update by @Hoeze in https://github.com/kipoi/models/pull/297
- add variant to APARENT metadata by @Hoeze in https://github.com/kipoi/models/pull/298
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/299
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/300
- Update json by @haimasree in https://github.com/kipoi/models/pull/302
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/303
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/304
- Updating ci by @haimasree in https://github.com/kipoi/models/pull/305
- Add apptainer by @haimasree in https://github.com/kipoi/models/pull/306
- singularity container images with updated links by @haimasree in https://github.com/kipoi/models/pull/307
- Fixed ci and added conda-libmamba-solver by @haimasree in https://github.com/kipoi/models/pull/308
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/309
- @twrightsman made their first contribution in https://github.com/kipoi/models/pull/285
- @bernardo-de-almeida made their first contribution in https://github.com/kipoi/models/pull/290
Full Changelog: https://github.com/kipoi/models/compare/v2021-11-15...v2022-04-26
Files
kipoi/models-v2022-04-26.zip
Files
(3.3 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/kipoi/models/tree/v2022-04-26 (URL)