Published March 8, 2021
| Version 0.2.7
Software
Open
pyPESTO - Parameter EStimation TOolbox for python
Description
- AMICI:
- Update to renamed steady state sensitivity modes (#843)
- Set amici.Solver.setReturnDataReportingMode (#835)
- Optimize
pypesto/objective/amici_util.py::par_index_slices(#845) - Remove Solver.getPreequilibration (#830)
- fix n_res size for error output with parameter dependent sigma (#812)
- PetabImporter: Auto-regenerate AMICI models in case of version mismatch (#848 )
- Pymc3
- Disable Pymc3 Sampler tests (#831 )
- Visualizations:
- Waterfall zoom (#808 )
- Reverse opacities of colors in prediction trajectories plots(#838)
- Model fit plots (#850)
- OptimizeResult:
- Summary method (#816 )
- Append method for OptimizeResult (#815 )
- added getattr function to OptimizeResult (#802 )
- General:
- disable progress bar in tests (#799 )
- Make Fides work with objectives, that do not have a hessian (#807 )
- removed ftol in favor of tol (#803 )
- Fix pyPESTO Select test; Update to stable black version (#810 )
- Fix id assignment in case of large number of starts (#825 )
- Temporarily fix jinja2 version (#826)
- Upgrade black to be compatible with latest click (#829)
- Fix wrong link in doc/example/hdf5_storage.ipynb (#827)
- Mark test/base/test_prior.py::test_mode as flaky (#833)
- Custom methods for autosave filenames (#822)
- fix saving ensemble predictions to hdf5 (#840 )
- Upgrad nbQA to 1.3.1 (#846)
- removed constantParameters for constant_parameters in notebook (#852)
Files
ICB-DCM/pyPESTO-v0.2.12.zip
Files
(4.4 MB)
| Name | Size | Download all |
|---|---|---|
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md5:2a521d49a7d5b40b026bf7b730e52959
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4.4 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/ICB-DCM/pyPESTO/tree/v0.2.12 (URL)