Published February 15, 2022
| Version 1.0.0
Software
Open
Gut Analysis Toolbox
Authors/Creators
- Sorensen, Luke
- Saito, Ayame
- Poon, Sabrina
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Noe Han, Myat
- Humenick, Adam
- Mutunduwe, Keith
- Glennan, Christie
- Mahdavian, Narges
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JH Brookes, Simon
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M McQuade, Rachel
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PP Foong, Jaime
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Gómez-de-Mariscal, Estibaliz
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King, Sebastian K.
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Haase, Robert
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Carbone, Simona
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A. Veldhuis, Nicholas
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P. Poole, Daniel
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Rajasekhar, Pradeep
Description
Major changes:
- Ganglia segmentation using Hu only, Video link
- Multichannel neuron analysis without Hu labelling. Although, ganglia segmentation may have to be manual.
- Model files installed automatically when using GAT update sites. ImageJ updater now checks for files within models folder. 🥳
Minor changes:
- Added sample image and interactive 'clij' workflow for explaining theory for ganglia segmentation using Hu. Video for script
- Error Reporting options in GAT menu
Notes
If you use this software, please cite it as below.
Files
pr4deepr/GutAnalysisToolbox-v0.2.zip
Files
(222.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:7bd588eea27c02746a8a6fdad66ca8d8
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222.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/pr4deepr/GutAnalysisToolbox/tree/v0.2 (URL)