Published May 23, 2025
| Version v8
Dataset
Open
PANDORA Database
Authors/Creators
- 1. Radboud University Medical Center
-
2.
Netherlands eScience Center
Description
This repository contains the latest update to the PANDORA template database, including pMHCI, pMHCII and reversed-pMHCII templates.
PANDORA is an anchor-restrained modelling pipeline for generating peptide-MHC structures.
Publications:
Rademaker, D.T., Parizi, F.M., Vreeswijk, M. van, Eerden, S., Marzella, D.F., Xue, L.C., 2025. Bidirectional Peptide Conformation Prediction for MHC Class II using PANDORA. https://doi.org/10.1101/2024.11.04.621877
Parizi, F.M., Marzella, D.F., Ramakrishnan, G., ‘T Hoen, P.A.C., Karimi-Jafari, M.H., Xue, L.C., 2023. PANDORA v2.0: Benchmarking peptide-MHC II models and software improvements. Front. Immunol. 14, 1285899. https://doi.org/10.3389/fimmu.2023.1285899
Marzella, D.F., Parizi, F.M., Tilborg, D.V., Renaud, N., Sybrandi, D., Buzatu, R., Rademaker, D.T., ‘T Hoen, P.A.C., Xue, L.C., 2022. PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes. Front. Immunol. 13, 878762. https://doi.org/10.3389/fimmu.2022.878762
Files
Files
(75.7 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:8e75734b7ed6394742e3c7d2d674396b
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75.7 MB | Download |
Additional details
Dates
- Created
-
2024-10-07
Software
- Repository URL
- https://github.com/X-lab-3D/PANDORA/tree/master
- Programming language
- Python