LinkML: A Linked Open Data Modeling Language

What's Changed

• Fix induced_slot setting alias equal to slot name by @kevinschaper in https://github.com/linkml/linkml/pull/3135
• fix: skip subproperty_of Literal expansion when range is class or enum by @vladistan in https://github.com/linkml/linkml/pull/3185
• Feature: Improve YARRRML generator object semantics & inline handling by @lapkinvladimir in https://github.com/linkml/linkml/pull/3131
• feat(plantumlgen): enum rendering, --all flag, format fix, mixin improvements by @mgskjaeveland in https://github.com/linkml/linkml/pull/3201
• mark more tests that use the metamodel as slow by @sneakers-the-rat in https://github.com/linkml/linkml/pull/3210
• Emit URIRef for xsd:anyURI values in RDF serialization by @amc-corey-cox in https://github.com/linkml/linkml/pull/3221
• Use vendored JSON-LD context in generators by @amc-corey-cox in https://github.com/linkml/linkml/pull/3224
• fix(owlgen): implement children_are_mutually_disjoint by @mgskjaeveland in https://github.com/linkml/linkml/pull/3187
• Submit releases to the LinkML Zenodo community by @dalito in https://github.com/linkml/linkml/pull/3206
• Add configurable list formatting for CSV/TSV serialization by @turbomam in https://github.com/linkml/linkml/pull/3134
• dont leave files open by @sneakers-the-rat in https://github.com/linkml/linkml/pull/3207
• build(deps): bump the github-actions group with 5 updates by @dependabot[bot] in https://github.com/linkml/linkml/pull/3232
• Add alumni section with contributors by @matentzn in https://github.com/linkml/linkml/pull/3195
• javagen: Represent boolean slots as Boolean-typed fields by default. by @gouttegd in https://github.com/linkml/linkml/pull/3178
• handle special ifabsent cases in ifabsent processor by @sneakers-the-rat in https://github.com/linkml/linkml/pull/2366
• Relax click dependency specification by @pkalita-lbl in https://github.com/linkml/linkml/pull/3240
• Fix/suppress vacuous axioms by @mgskjaeveland in https://github.com/linkml/linkml/pull/3192
• Create new generator sqlvalidationgen by @FlorianK13 in https://github.com/linkml/linkml/pull/3127
• Update Community-Meetings.md by @sagehrke in https://github.com/linkml/linkml/pull/3252
• cheaper docgen test and use threadpoolexecutor to generate classes by @sneakers-the-rat in https://github.com/linkml/linkml/pull/3220
• Add plugin-link for interactive LinkML viewing by @dkapitan in https://github.com/linkml/linkml/pull/3257
• downgrade null/empty enum errors to warnings for optional slots by @madanucd in https://github.com/linkml/linkml/pull/3227
• Fix: use kwargs in _normalize_inlined to support inherited classes by @dalito in https://github.com/linkml/linkml/pull/3247
• Remove obsolete info on testing from pre-monorepo times by @dalito in https://github.com/linkml/linkml/pull/3268
• Clean up obsolete files in linkml-runtime package and update references to new home by @dalito in https://github.com/linkml/linkml/pull/3271
• Follow-up of PR #3271 - remove xfails by @dalito in https://github.com/linkml/linkml/pull/3275
• Update index.rst by @sagehrke in https://github.com/linkml/linkml/pull/3288
• Create office-hours.md by @sagehrke in https://github.com/linkml/linkml/pull/3286
• improve plantuml generator help by @Silvanoc in https://github.com/linkml/linkml/pull/3290
• feat(owlgen): add covering axiom for abstract classes by @mgskjaeveland in https://github.com/linkml/linkml/pull/3219
• fix(generators): omit sh:class linkml:Any from SHACL output by @jdsika in https://github.com/linkml/linkml/pull/3278
• Add new decorator feature for compliance tests by @matentzn in https://github.com/linkml/linkml/pull/3302
• Implementing range_expression in jsonschemagen by @cmungall in https://github.com/linkml/linkml/pull/2860
• Fix pydantic generator ifabsent=bnode producing invalid code by @amc-corey-cox in https://github.com/linkml/linkml/pull/3238
• fix(rdflib): support Pydantic models in RDFLibDumper by @emmanuel-ferdman in https://github.com/linkml/linkml/pull/3234
• Sort type declaration classes in pythongen according to inheritence graph by @christian-monch in https://github.com/linkml/linkml/pull/3045
• fix(generators): prefer literal coercion in mixed any_of unions by @jdsika in https://github.com/linkml/linkml/pull/3276
• fix(shacl): emit sh:BlankNodeOrIRI for nodeidentifier type by @jdsika in https://github.com/linkml/linkml/pull/3291
• feat(context): add --exclude-imports flag to ContextGenerator by @jdsika in https://github.com/linkml/linkml/pull/3294
• Fix issue #3011 test and add documentation for SHACL naming modes by @kevinschaper in https://github.com/linkml/linkml/pull/3090
• fix(shaclgen): migrate ShaclGenerator from SchemaLoader to SchemaView by @jdsika in https://github.com/linkml/linkml/pull/3293
• Enable parallel test execution with pytest-xdist by @amc-corey-cox in https://github.com/linkml/linkml/pull/3306
• Add AI-Assisted Discussions guidelines by @matentzn in https://github.com/linkml/linkml/pull/3150
• Make delimited file loader schema-aware to preserve string/enum columns by @Sigfried in https://github.com/linkml/linkml/pull/3289
• Consolidate GOLR biolink snapshots into single file by @amc-corey-cox in https://github.com/linkml/linkml/pull/3307
• Misc improvements to the Java code generator by @gouttegd in https://github.com/linkml/linkml/pull/3255
• Validate tutorial as part of standard tests by @dalito in https://github.com/linkml/linkml/pull/3272
• Refactor: cleanup dead code by @Silvanoc in https://github.com/linkml/linkml/pull/3265
• ifabsent enum serialization fix by @kevinschaper in https://github.com/linkml/linkml/pull/3308
• fix: handle None preconditions in doc-gen class template by @saschabuehrle in https://github.com/linkml/linkml/pull/3310
• Generator-level governance: add first stab at team proposal based on git blame line count by @matentzn in https://github.com/linkml/linkml/pull/3137
• fix(gen-json): include mixins/abstracts for union(anyof) support by @noelmcloughlin in https://github.com/linkml/linkml/pull/3274
• Add boolean truthy/falsy handling for CSV/TSV by @turbomam in https://github.com/linkml/linkml/pull/3144
• Fix linkml-runtime version floor for multivalued inlined slots (#3182) by @turbomam in https://github.com/linkml/linkml/pull/3183
• Fix broken doctests across both packages by @cmungall in https://github.com/linkml/linkml/pull/3230
• Update metamodel test fixtures from linkml-model by @github-actions[bot] in https://github.com/linkml/linkml/pull/3170
• normalize: Correctly recognise linkml:Any classes. by @gouttegd in https://github.com/linkml/linkml/pull/3328
• add doc and examples for instantiates vs implements by @sierra-moxon in https://github.com/linkml/linkml/pull/3284
• Create a pull request template by @matentzn in https://github.com/linkml/linkml/pull/3335
• Update Community-Meetings.md by @sagehrke in https://github.com/linkml/linkml/pull/3339
• Update CITATION.cff. by @gouttegd in https://github.com/linkml/linkml/pull/3342
• Fixes issue #3235: Summary generator prefixes enums in ranges with "Unknown_" by @sveinugu in https://github.com/linkml/linkml/pull/3236
• javagen: Render uriorcurie-typed slots as String fields. by @gouttegd in https://github.com/linkml/linkml/pull/3311
• fix(example-runner): normalize hyphenated key names / linkml:Any handling by @noelmcloughlin in https://github.com/linkml/linkml/pull/3319
• oocodegen/javagen: Add option to honour slot aliases when deriving field names by @gouttegd in https://github.com/linkml/linkml/pull/3326
• Generate compliance dashboard by @matentzn in https://github.com/linkml/linkml/pull/3303

New Contributors

• @dkapitan made their first contribution in https://github.com/linkml/linkml/pull/3257
• @jdsika made their first contribution in https://github.com/linkml/linkml/pull/3278
• @christian-monch made their first contribution in https://github.com/linkml/linkml/pull/3045
• @Sigfried made their first contribution in https://github.com/linkml/linkml/pull/3289
• @saschabuehrle made their first contribution in https://github.com/linkml/linkml/pull/3310
• @sveinugu made their first contribution in https://github.com/linkml/linkml/pull/3236

Full Changelog: https://github.com/linkml/linkml/compare/v1.10.0...v1.11.0-rc1