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Published March 12, 2022 | Version v0.7.0
Software Open

althonos/pyrodigal: v0.7.0

Authors/Creators

  • 1. EMBL, @zellerlab

Description

Added
  • Support for setting a custom minimum gene length in pyrodigal.OrfFinder.
  • Genes.write_scores method to write the node scores to a file.
  • Gene.__repr__ and Node.__repr__ methods to display some useful attributes.
  • Sequence.__str__ method to get back a nucleotide string from a Sequence object.
Changed
  • Use a more compact data structure to store Gene data.
Fixed
  • Nodes._calc_orf_gc reading nucleotides after the sequence end when computing GC content for edge nodes.
Removed
  • pyrodigal.Pyrodigal class (use pyrodigal.OrfFinder instead).
  • pyrodigal.Predictions class (functionality merged into pyrodigal.Genes).

Files

althonos/pyrodigal-v0.7.0.zip

Files (1.2 MB)

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md5:7ebcf012ef2f8e95724dcc00576205f6
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Additional details

Related works

Is supplement to
https://github.com/althonos/pyrodigal/tree/v0.7.0 (URL)