Published February 21, 2022
| Version v2022-02-21
Software
Open
obophenotype/uberon: 2022-02-21 Release
Authors/Creators
- Chris Mungall1
- Nico Matentzoglu2
- Shawn Tan
- David Osumi-Sutherland3
- paolaroncaglia
- Nicole Vasilevsky
- Meghan Balk4
- Jim Balhoff5
- Damien Goutte-Gattat
- Anita Caron
- Ray Stefancsik
- Melissa Haendel
- Maria Keays
- Martin Larralde6
- Wasila Dahdul
- bvarner-ebi
- Tom Gillespie
- Bonita Lam7
- diatomsRcool
- Sebastian Köhler8
- Egon Willighagen9
- Katrin Leinweber10
- emquardokus
- sabrinatoro
- 1. Lawrence Berkeley National Laboratory
- 2. semanticly Ltd
- 3. www.virtualflybrain.org
- 4. Bio5 Institute
- 5. @RENCI
- 6. EMBL, @zellerlab
- 7. Stanford University
- 8. @adahealth
- 9. @BiGCAT-UM
- 10. @gitlabhq
Description
What's Changed
- Extend SPARQL to delete dot-definition by @anitacaron in https://github.com/obophenotype/uberon/pull/2200
- Remove spatial disjointness AP on PNS/CNS. by @gouttegd in https://github.com/obophenotype/uberon/pull/2202
- WIP: uberon pattern work by @cmungall in https://github.com/obophenotype/uberon/pull/2146
- Add synonym type properties for #1665 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2226
- Add 3 TCs for #2194 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2227
- Added part_of cerebral cortex to laminar subdivision of the cortex by @shawntanzk in https://github.com/obophenotype/uberon/pull/2217
- small intestine capillary #2150 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2228
- Fix broken image links in uberon-edit.obo by @rays22 in https://github.com/obophenotype/uberon/pull/2234
- adding antorbital notch by @megbalk in https://github.com/obophenotype/uberon/pull/2221
- Fix typos for #2080 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2236
- Add comment for #2111 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2237
- Move 'zona limitans intrathalamica' under 'anatomical junction'. by @balhoff in https://github.com/obophenotype/uberon/pull/2219
- Added lymphoid nodule by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2243
- Added synonyms for Lymph_node_trabeculae #1749 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2244
- made nerve plexus a subtype of anatomical junction, https://github.com/obophenotype/cell-ontology/issues/1306 by @cmungall in https://github.com/obophenotype/uberon/pull/2181
- Fix string on euarch by @shawntanzk in https://github.com/obophenotype/uberon/pull/2248
- Edit for #1754 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2251
- Pr import to use slim by @shawntanzk in https://github.com/obophenotype/uberon/pull/2252
- Changed all UBERON:2X terms with anatomical lines to anatomical junction by @shawntanzk in https://github.com/obophenotype/uberon/pull/2246
- adding synonym by @megbalk in https://github.com/obophenotype/uberon/pull/2245
- adding nasal bones by @megbalk in https://github.com/obophenotype/uberon/pull/2220
- Add synonym to UBERON:0003886 future coelemic cavity lumen by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2255
- Added UBERON:8410070 'levatores costarum' for #1904 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2256
- Fix annotation for #1904 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2257
- updated DEL (UBERON:2000711) label by @sabrinatoro in https://github.com/obophenotype/uberon/pull/2254
- Changed property_value taxon stuff to relationship by @shawntanzk in https://github.com/obophenotype/uberon/pull/2260
- Obsolete 'cestode' (UBERON:0018387). by @gouttegd in https://github.com/obophenotype/uberon/pull/2258
- Unify all attribution to ORCID using dct:contributor by @anitacaron in https://github.com/obophenotype/uberon/pull/2206
- Added RP3V by @shawntanzk in https://github.com/obophenotype/uberon/pull/2250
- Add sparql check for taxon range by @anitacaron in https://github.com/obophenotype/uberon/pull/2241
- Fix space mistake by @shawntanzk in https://github.com/obophenotype/uberon/pull/2265
- Change Makefile to remove uberon terms from pato and nbo imports by @shawntanzk in https://github.com/obophenotype/uberon/pull/2269
- adding rostrum by @megbalk in https://github.com/obophenotype/uberon/pull/2262
- moved bone-related terms under "surface structure" to "surface of bone" by @megbalk in https://github.com/obophenotype/uberon/pull/2247
- Fixed never_in_taxon in rostrum by @shawntanzk in https://github.com/obophenotype/uberon/pull/2271
- adding zygomatic arch sides by @megbalk in https://github.com/obophenotype/uberon/pull/2223
- Add test to check obo serialisation by @anitacaron in https://github.com/obophenotype/uberon/pull/2264
- new terms and edits related to pudendal structures, see https://pubmed.ncbi.nlm.nih.gov/33259666/ by @cmungall in https://github.com/obophenotype/uberon/pull/2170
- Fix typo in UBERON:0001272 by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2278
- Add UBERON:8410073 medullary region of kidney by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2279
- Reinstate obsolete terms by @anitacaron in https://github.com/obophenotype/uberon/pull/2277
- Edit UBERON:0001284 renal column by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2280
- Add comments to 'medullary region of kidney' and 'renal medulla' by @paolaroncaglia in https://github.com/obophenotype/uberon/pull/2282
- Add vasculature template by @anitacaron in https://github.com/obophenotype/uberon/pull/2209
- Added xrefs to defs by @shawntanzk in https://github.com/obophenotype/uberon/pull/2285
- Create upper_tooth_pattern.yaml by @megbalk in https://github.com/obophenotype/uberon/pull/2231
- insect dorsal vessel definitions by @cmungall in https://github.com/obophenotype/uberon/pull/2272
- Request to add new editor to uberon-idranges.owl by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/2297
- Closes #2230 'glomerular visceral epithelium' should be part of (or merged with) glomerular visceral layer by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/2299
- removed reflexive develops from by @shawntanzk in https://github.com/obophenotype/uberon/pull/2295
- Change equivalent-classes-allowed from none to asserted-only to generate materialized.owl by @anitacaron in https://github.com/obophenotype/uberon/pull/2306
- clean up makefile by @matentzn in https://github.com/obophenotype/uberon/pull/2307
- Increase severity of QC test by @matentzn in https://github.com/obophenotype/uberon/pull/2309
- Change external pudendal vein tributary_of to connected_to by @shawntanzk in https://github.com/obophenotype/uberon/pull/2304
- Changed parvicellular to parvocellular by @shawntanzk in https://github.com/obophenotype/uberon/pull/2311
- Remove Harderian gland taxon restriction by @rays22 in https://github.com/obophenotype/uberon/pull/2312
- Change vertebrate_skeletal_anatomy_curators from created_by to oboInOwl:source by @anitacaron in https://github.com/obophenotype/uberon/pull/2239
- Add contributor value check by @anitacaron in https://github.com/obophenotype/uberon/pull/2273
- @sabrinatoro made their first contribution in https://github.com/obophenotype/uberon/pull/2254
- @bvarner-ebi made their first contribution in https://github.com/obophenotype/uberon/pull/2297
Full Changelog: https://github.com/obophenotype/uberon/compare/v2021-11-28...v2022-02-21
Files
obophenotype/uberon-v2022-02-21.zip
Files
(239.3 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/obophenotype/uberon/tree/v2022-02-21 (URL)