AstrobioMike/GToTree: GToTree v1.6.30

Published February 15, 2022 | Version v1.6.30

Software Open

KO searching finally now fully implemented – only almost a year and a half after @halexand brought it up, https://github.com/AstrobioMike/GToTree/issues/24
- target KOs are passed in a file to the -K parameter
a new helper program for managing environment variables to hopefully help in cases where users may not have write privileges in the install conda environment location, thanks to input from @felixeye, https://github.com/AstrobioMike/GToTree/issues/45
- gtt-data-locations
removed pre-packaged HMM SCG-sets from initial installation and github, they're not hosted on figshare and are downloaded and stored if/when used
ugly color codes are no longer captured in output log file
improvements to gtt-get-accessions-from-GTDB, including now checking variable/path of where the GTDB data is supposed to be stored and reporting how to change if needed
added --seed option to gtt-subset-GTDB-accessions, so we can do things the same way across different datasets if using the same ref version
adjustments to Pfam searching output directory structure and filenames to match new KO searching
no longer setting up NCBI tax info at installation, now it is done if/when used

Files

Name	Size	Download all
AstrobioMike/GToTree-v1.6.30.zip md5:932f415ed50baac9a5d784bdb7164756	18.9 MB	Preview Download

Is supplement to: https://github.com/AstrobioMike/GToTree/tree/v1.6.30 (URL)