Published January 21, 2022 | Version v1
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Fig. 1. 16S in Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa)

Description

Fig. 1. 16S rRNA tree of the genus Latilactobacillus Reference genomes for five species of Latilactobacillus and the outgroup species Paralactobacillus selangorensis were determined from the Genome Taxonomy Database release 89 [18] and downloaded from the NCBI. The in-house-sequenced genome of strain AMBP162T was added. 16S rRNA sequences were extracted from whole genome sequences using Barrnap version 0.9 [29] and aligned with MAFFT version 7.407 [30]. A maximum-likelihood phylogeny was inferred with IQ-Tree version 1.6.12 [31], using a TN+F+I nucleotide substitution model. The tree was visualized with ggtree version 3.0.2 [32].

Notes

Published as part of Legein, Marie, Wittouck, Stijn & Lebeer, Sarah, 2022, Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa), pp. 1-9 in International Journal of Systematic and Evolutionary Microbiology (005193) 72 (1) on page 3, DOI: 10.1099/ijsem.0.005193, http://zenodo.org/record/6048767

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Journal article: 10.1099/ijsem.0.005193 (DOI)
Journal article: urn:lsid:plazi.org:pub:FFCAFFC3FFEDEA0DFFE0970BFFDFFF95 (LSID)
Journal article: http://publication.plazi.org/id/FFCAFFC3FFEDEA0DFFE0970BFFDFFF95 (URL)
Journal article: https://zenodo.org/record/6048767 (URL)