Published January 21, 2022
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Fig. 1. 16S in Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa)
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Fig. 1. 16S rRNA tree of the genus Latilactobacillus Reference genomes for five species of Latilactobacillus and the outgroup species Paralactobacillus selangorensis were determined from the Genome Taxonomy Database release 89 [18] and downloaded from the NCBI. The in-house-sequenced genome of strain AMBP162T was added. 16S rRNA sequences were extracted from whole genome sequences using Barrnap version 0.9 [29] and aligned with MAFFT version 7.407 [30]. A maximum-likelihood phylogeny was inferred with IQ-Tree version 1.6.12 [31], using a TN+F+I nucleotide substitution model. The tree was visualized with ggtree version 3.0.2 [32].
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- Journal article: 10.1099/ijsem.0.005193 (DOI)
- Journal article: urn:lsid:plazi.org:pub:FFCAFFC3FFEDEA0DFFE0970BFFDFFF95 (LSID)
- Journal article: http://publication.plazi.org/id/FFCAFFC3FFEDEA0DFFE0970BFFDFFF95 (URL)
- Journal article: https://zenodo.org/record/6048767 (URL)