Published February 4, 2022
| Version v1
Journal article
Restricted
Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
Authors/Creators
Description
Ji, Jingxin, Li, Zhuang, Li, Yu, Kakishima, Makoto (2022): Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China. Phytotaxa 533 (1): 1-48, DOI: 10.11646/phytotaxa.533.1.1
Files
Restricted
The record is publicly accessible, but files are restricted. Log in to check if you have access.
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FFDE2836E47DFFC9DC4BEF3B4D760C1F
References
- Abbasi, M., Stephen, B., Goodwin, B. & Scholler, M. (2005) Taxonomy, phylogeny, and distribution of Puccinia graminis, the black stem rust: new insights based on rDNA sequence data. Mycoscience 46: 241-247. https://doi.org/10.1007/s10267-005-0244-x
- Aime, M.C. (2006) Toward resolving family-level relationships in rust fungi (Uredinales). Mycoscience 47: 112-122. https://doi.org/10.1007/s10267-006-0281-0
- Aime, M.C., Bell, C.D. & Wilson, A.W. (2018) Deconstructing the evolutionary complexity between rust fungi (Pucciniales) and their plant hosts. Studies in Mycology 89: 143-152. https://doi.org/10.1016/j.simyco.2018.02.002
- Aime, M.C. & McTaggart, A.R. (2021) A higher-lank classification for rust fungi, with notes on genera. Fungal Systematics and Evolution 7: 21-47. https://doi.org/10.3114/fuse.2021.07.02
- Aime, M.C., McTaggart, A.R., Mondo, S.J. & Duplessis, S. (2017) Phylogenetics and phylogenomics of rust fungi. Advances in Genetics 100: 267-307. https://doi.org/10.1016/bs.adgen.2017.09.011
- Arthur, J.C. (1934) Manual of the rusts in United States and Canada. Purdue Research Foundation, USA.
- Azbukina, Z.M. (2005) Rust fungi, Cryptogamic plants, fungi and mosses of the Russian Far East, vol. 5. Dalnauka, Vladivostok, Russia.
- Azbukina, Z.M. (2015) Definitorium fungorum Rossiae, Ordo Pucciniales 1. Dal'nauka, Vladivostok, Russia.
- Berlin, A., Wallenhammar, A.C. & Andersson, B. (2018) Population differentiation of Puccinia coronata between hosts -implications for the epidemiology of oat crown rust. European Journal of Plant Pathology 152: 901-907. https://doi.org/10.1007/s10658-018-01605-x
- Bolton, M.D., Kolmer, J.A. & Garvin, D.F. (2008) Wheat leaf rust caused by Puccinia triticina. Molecular Plant Pathology 9: 563-575. https://doi.org/10.1111/j.1364-3703.2008.00487.x
- Bushnell, W.R. & Roelfs, A.P. (Eds.) (1984) The cereal rusts vol 1. Academic Press, Orland, USA.
- Chen, W., Wellings, C., Chen, X., Kang, Z. & Liu, T. (2014) Wheat stripe (yellow) rust caused by Puccinia striiformis f. sp. tritici. Molecular Plant Pathology 15: 433-446. https://doi.org/10.1111/mpp.12116
- Cunningham, G.H. (1931) The rust fungi of New Zealand. John McIndoe Printer, Dumedin, New Zealand.
- Cummins, G.B. (1951) Uredinales of continental China collected by S. Y. Cheo II. Mycologia 43: 78-98.
- Cummins, G.B. (1971) The rust fungi of cereals, grasses and bamboos. Springer-Verlag, New York, USA.
- Cummins, G.B. & Hiratsuka, Y. (2003) Illustrated genera of rust fungi, 3rd ed. American Phytopathological Society, St. Paul, Minnesota, USA.
- Demers, J.E., Liu, M., Hambleton, S. & Castlebury, L.A. (2017) Rust fungi on Panicum. Mycologia 109: 1-17. https://doi.org/10.1080/00275514.2016.1262656
- Dixon, L.J., Castlebury, L.A., Aime, M.C., Glynn, N.C. & Comstock, J.C. (2010) Phylogenetic relationships of sugarcane rust fungi. Mycological Progress 9: 459-468. https://doi.org/10.1007/s11557-009-0649-6
- Edler, D., Klein, J., Antonelli, A. & Silvestro, D. (2021) raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution 12: 373-377. https://doi.org/10.1101/800912
- Gardes, M. & Bruns, T.D. (1993) ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113-118. https://dx.doi.org/10.1111/j.1365-294X.1993.tb00005.x
- Gaumann, E. (1959) Die Rostpilze Mitteleuropas. Buchdruckerei Bucheler Co, Bern, Germany.
- Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
- Harada, Y. (1984) Materials for the rust flora of Japan IV. Transactions of Mycological Society of Japan 25: 287-294.
- Harada, Y. & Hasegawa, H. (1975) Aecial states of two Phragmites rust fungi, Puccinia moriokaensis S. Ito and P. okatamaensis S. Ito. Transactions of Mycological Society of Japan 16: 42-50.
- Hiratsuka, N. (1960) A provisional list of Uredinales of Japan proper and the Ryukyu Islands. The Science Bulletin of the Division of Agriculture, Home Economics and Engineering, University of Ryukyus 7: 189-314.
- Hiratsuka, N. & Chen, Z.C. (1991) A list of Uredinales collected from Taiwan. Transactions of Mycological Society of Japan 32: 3-22.
- Hiratsuka, N. & Kaneko, S. (1983) A provisional list of Puccinia species on the grasses in Japan. Report of Tottori Mycological Institute (Japan) 21: 61-75.
- Hiratsuka, N., Sato, S., Katsuya, K., Kakishima, M., Hiratsuka, Y., Kaneko, S., Ono, Y., Sato, T., Harada, Y., Hiratsuka, T. & Nakayama, K. (1992) The rust flora of Japan. Tsukuba-shuppankai, Tsukuba, Japan.
- Hiratsuka, T. (1958) The species of rust fungi parasitic on the grasses collected in the southern Kyusyu and the Ryukyu Islands, Japan. Scientific Bulletin of the Agriculture, Home Economics and Engeineering Division, University of the Ryukyus 5: 23-106.
- Hiratsuka, Y. & Sato, S. (1982) Morphology and taxonomy of rust fungi. In: Scott, K.J. & Chakravorty, A.K. (Eds.) The rust fungi. Academic Press, London, UK, pp. 1-36.
- Hrabetova, M., Kolarik, M. & Markova, J. (2015) Phylogeny and taxonomy of grass rusts with aecia on Ranunculus and Ficaria. Mycological Progress 14: 12. https://doi.org/10.1007/s11557-015-1033-3
- Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
- Hylander, N., Jorstad, I. & Nannfeldt, J.A. (1953) Enumeratio Uredinearum Scandinavicarum. Opera Botany 1: 1-102.
- Ito, S. (1909) On the Uredinales parasitic on the Japanese Gramineae. Journal of College of Agriculture, Tohoku Imperial University (Sapporo) 3: 180-265.
- Ito, S. (1950) Mycological flora of Japan, vol. 2, no. 3. Yokendo, Tokyo, Japan.
- Ji, J.X., Li, Z., Wan, Q., Li, Y. & Kakishima, M. (2017) Life cycle of Aecidium klugkistianum on Ligstrum and its new combination, Puccinia klugkistiana. Mycoscience 58: 307-311. https://doi.org/10.1016/j.myc.2017.01.004
- Ji, J.X., Li, Z., Li, Y. & Kakishima, M. (2019a) Two new species of Pucciniastrum producing dimorphic sori and spores from northeast of China. Mycological Progress 18: 529-540. https://doi.org/10.1007/s11557-018-1460-z
- Ji, J.X., Li, Z., Li, Y. & Kakishima, M. (2019b) Life cycle of Nothoravenelia japonic a and its phylogenetic position in Pucciniales, with special reference to the genus Phakopsora. Mycological Progress 18: 855-864. https://doi.org/10.1007/s11557-019-01496-0
- Ji, J.X., Li, Z., Li, Y. & Kakishima, M. (2019c) Notes on rust fungi in China 7. Aecidium caulophylli life cycle inferred from phylogenetic evidence and renamed as Puccinia caulophylli comb. nov. Mycotaxon 134: 719-730. https://doi.org/10.5248/134.719
- Ji, J.X., Li, Z., Li, Y. & Kakishima, M. (2020a) Notes on rust fungi in China 8. Pucciniastrum tiliae life cycle and new host plants inferred from phylogenetic evidence. Mycotaxon 135: 491-500. https://doi.org/10.5248/135.491
- Ji, J.X., Li, Z., Li, Y. & Kakishima, M. (2020b) Notes on rust fungi in China 9. Puccinia miscanthi life cycle and morphology confirmed by inoculation. Mycotaxon 135: 525-534. https://doi.org/10.5248/135.525
- Ji, J.X., Li, Z., Li, Y. & Kakishima, M. (2020c) Life cycle and taxonomy of Chrysomyxa succinea in China and phylogenetic positions of Caeoma species on Rhododendron. Forest Pathology 2020;50: e12585. https://doi.org/10.1111/efp.12585
- Ji, J.X., Li, Z., Li, Y. & Kakishima, M. (2020d) Life cycle and taxonomy of Melampsora abietis -populi in China and its phylogenetic position in Melampsora on Populus. Mycological Progress 19: 1281-1291. https://doi.org/10.1007/s11557-020-01624-1
- Jia, L.X. & Li, Z.Y. (2011) A report of rust disease on glossy privet. Northern Horticulture 2011 (09): 174-176.
- Jin, Y., Szabo, L.J. & Carson, M. (2010) Century-old mystery of Puccinia striiformis life history solved with the identification of Berberis as an alternate host. Phytopathology 100: 432-435. https://doi.org/10.1094/PHYTO-100-5-0432
- Jorstad, I. (1950) The graminicolous rust fungi of Norway. Skrifter Norske Vidensk Akademie I 1950: 1-92.
- Kakishima, M. & Sato, S. (1988) Rust diseases of ornamental plants (II) Rusts of olomon's seal and lily of valley caused by Puccinia sessilis. Annals of the Phytopathological Society of Japan 54: 60-63.
- Kenaley, S.C., Hudler, G.W. & Bergstrom, G.C. (2016) Detection and phylogenetic relationships of Puccinia emaculata and Uromyces graminicola (Pucciniales) on switchgrass in New York State using rDNA sequence information. Fungal Biology 120: 791-806. https://doi.org/10.1016/j.funbio.2016.01.016
- Kim, C.J. (1963) A provisional list of Uredinales of Korea. Korean Journal of Microbiology 1: 51-64.
- Leppik, E.E. (1965) Some viewpoints on the phylogeny of rust fungi. V. Evolution of biological specialization. Mycologia 57: 6-22.
- Leppik, E.E. (1967) Some viewpoints on the phylogeny of rust fungi. VI. Biogenic radiation. Mycologia 59: 568-579.
- Lee, S.H., Seo, S.T., Lee, S.K., Lee, C.K. & Shin, H.D. (2019) First report of rust caused by aecial stage of Puccinia klugkistiana on Ligustrum japonicum in Korea. Plant Disease 103: 160. https://doi.org/10.1094/PDIS-07-18-1233-PDN
- Li, Z., Li, Y., Wang, X. & Wang, D.L. (2009) First report of the aecial stage of a rust disease caused by Puccinia elymi on Thalictrum squarrosum in China. Plant Pathology 58: 798. https://doi.org/10.1111/j.1365-3059.2009.02029.x
- Liu, M. & Hambleton, S. (2010) Taxonomic study of stripe rust, Puccinia striiformis sensu lato, based on molecular and morphological evidence. Fungal Biology 114: 881-899.
- Liu, M. & Hambleton, S. (2013) Laying the formation for a taxonomic review of Puccinia coronata s.l. in a phylogenetic context. Mycological Progress 12: 63-89. https://doi.org/10.1007/s11557-012-0814-1
- Liu, M., McCabe, E., Chapados, J.T., Carey, J., Wilson, S.K., Tropiano, R., Redhead, S.A., Levesque, C.A. & Hambleton, S. (2015) Detection and identification of selected cereal rust pathogens by TaqMan real-time PCR. Canadian Journal of Plant Pathology 37: 92-105. https://doi.org/10.1080/07060661.2014.999123
- Ma, X., Liu, Y., Li, Q., Tian, X., Du, Z., Kang, Z. & Zhao, J. (2020) Identification of Berberis spp. as alternate hosts for Puccinia achnatheri -sibirici under controlled conditions and morphologic observations of sexual stage development of the rust fungus. Frontiers in Microbiology 11: 1278. https://doi.org/10.3389/fmicb.2020.01278
- Maier, W., Wingfield, B.D., Mennicken, M. & Wingfield, M.J. (2007) Polyphyly and two emerging lineages in the rust genera Puccinia and Uromyces. Mycological Research 111: 176-185.
- McTaggart, A.R., Shivas, R.G., Van der Nest, M.A., Roux, J., Wingfield, B.D. & Wingfield, M.J. (2016) Host jumps shaped the diversity of extant rust fungi (Pucciniales). New Phytologist 209:1149-1158. https://doi.org/10.1111/nph.13686
- Miura, M. (1928) Flora of Manchuria and east Mongolia III . Cryptogams, Fungi. Minamimanshutetsudo, Dalian, China.
- O'Donnell, K. (1993) Fusarium and its near relatives. In: Reynolds, D.R. & Taylor, J.W. (Eds.) The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. CAB International, Wallingford, UK, pp. 225-233.
- Ono, Y. (2008) Why life-cycle studies?: Implications in the taxonomy of rust fungi (Uredinales). Nippon Kingakukai Kaiho 49: 1-28. https://doi.org/10.18962/jjom.jjom.H19-01
- Ono, Y. & Azbukina, Z.M. (1997) Heteroecious life cycle of two graminicolous Puccinia (Urediniales). Mycoscience 38: 281-286. https://doi.org/10.1007/BF02464085
- Padamsee, M. & McKenzie, E.H.C. (2017) The intriguing and convoluted life of a heteroecious rust fungus in New Zealand. Plant Pathology 66: 1248-1257. https://doi.org/10.1111/ppa.12672
- Petersen, R.H. (1974) The rust fungus life cycle. Botanical Review 40: 453-513.
- Posada, D. & Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
- Rambaut, A. (2014) FigTree v1.4.2, A graphical viewer of phylogenetic trees. [http://tree.bio.ed.ac.uk/software/figtree/]
- Roelfs, A.P. & Bushnell, W.R. (Eds.) (1985) The cereal rust vol. 2. Academic Press, Orland, USA.
- Roy, B.A., Vogler, D.R., Bruns, T.D. & Szaro, T.M. (1998) Cryptic species in the Puccinia monoica complex. Mycologia 90: 846-853. https://doi.org/10.1080/00275514.1998.12026978
- Sato, T. & Sato, S. (1982) Aeciospore surface structure of the Uredinales. Transactions of Mycological Society of Japan 23: 51-63.
- Sato, T. & Sato, S. (1985) Morphology of aecia of the rust fungi. Transactions of British Mycological Society 85: 223-238.
- Savile, D.B.O. (1984) Taxonomy of the cereal rust fungi. In: Bushnell, W.R. & Roelfs, A.P. (Eds.) The Cereal Rusts, vol. 1. Academic Press, Orlando, USA, pp. 79-112.
- Soreng, R.J., Peterson, P.M., Romaschenko, K., Davidse, G., Zuloaga, F.O., Judziewicz, E.J., Filgueiras, T.S., Davis, J.I. & Morrone, O. (2015) A worldwide phylogenetic classification of the Poaceae (Gramineae). Journal of Systematics and Evolution 53: 117-137. https://doi.org/10.1111/jse.12150
- Swofford, D.L. (2019) PAUP*: Phylogenetic analysis using parsimony and other methods, Version 4.0a165. Sinauer Associates, Sunderland, USA.
- Szabo, L. (2006) Deciphering species complexes: Puccinia andropogonis and Puccinia coronata, examples of differing modes of speciation. Mycoscience 47: 130-136.
- Tai, F.L. (1979) Sylloge fungorum Sinicorum. Science Press, Beijing, China.
- Taylor, J.W., Jacobson, D.J., Kroken, S., Kasuga, T., Geiser, D.M., Hibbett, D.S. & Fischer, M.C. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32.
- Termorshuizen, A.J. & Swertz, C.A. (2011) Dutch rust fungi. Aad Termorsguizen, Netherland.
- Van der Merwe, M.M., Walker, J., Ericson, L. & Burdon, J.J. (2008) Coevolution with higher taxonomic host groups within the Puccinia/ Uromyces rust lineage obscured by host jumps. Mycological Research 112: 1387-1408. https://doi.org/10.1016/j.mycres.2008.06.027
- Virtudazo, E.V., Nakamura, H. & Kakishima, M. (2001) Phylogenetic analysis of sugarcane rusts based on sequences of ITS, 5.8S rDNA and D1/D2 regions of LSU rDNA. Journal of General Plant Pathology 67: 28-36. https://doi.org/10.1007/PL00012983
- Wang, Y.C. (1951) Index Uredinearum Sinensium. Academia Sinica, Beijing, China.
- Wang, Y.C. (1965) New species of graminicolous rust fungi from China. Acta Phytotaxa 10: 291-299.
- Wang, Y.C. & Wei, S.X. (1983) Taxonomic studies on graminicolous rust fungi of China. Science Press, Beijing, China.
- White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequence of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic Press, San Diego, USA, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wilson, M. & Henderson, D.M. (1966) The British rust fungi. Cambridge University Press, Cambridge, UK.
- Zambino, P.J. & Szabo, L.J. (1993) Phylogenetic relationships of selected cereal and grass rusts based on rDNA sequence analysis. Mycologia 85: 401-414. https://doi.org/10.1080/00275514.1993.12026292
- Zhao, P., Kakishima, M., Wang, Q. & Cai, L. (2017) Resolving the Melampsora epitea complex. Mycologia 109: 391-407. http://dx.doi.org/10.1080/00275514.2017.1326791
- Zhao, P., Wang, Q.H., Tian, C.M. & Kakishima, M. (2015) Integrating a numerical taxonomic method and molecular phylogeny for species delimitation of Melampsor a species (Melampsoraceae, Pucciniales) on willows in China. PLoS ONE 10: e0144883. https://doi.org/10.1371/journal.pone.0144883
- Zhuang, J.Y., Wei, S.X. & Wang, Y.C. (1998) Flora fungorum Sinicorum, vol.10, Uredinales (1). Science Press, Beijing, China.