HobnobMancer/cazy_webscraper: v2.0.5

• Trouble shoot uniprot by @HobnobMancer in https://github.com/HobnobMancer/cazy_webscraper/pull/73
• Trouble shoot getting data from NCBI by @HobnobMancer in https://github.com/HobnobMancer/cazy_webscraper/pull/74

• UniProt: cazy_webscraper can now be used successfully for retrieving data from UniProt and adding the data to the local CAZyme database. This includes retrieving:
• UniProt accessions
• Protein names
• Protein sequences
• EC number annotations

• PDB accessions

• GenBank: cazy_webscraper can now be used to automate the retreival of protein sequences from GenBank for proteins in a local CAZyme database mathcing the users specified critieria. These protein sequences are stored in the local CAZyme database, and can be extracted to a FASTA file using cazy_webscraper

• Caching:

• More data is cached
• Cached data can be used to continue data retrievals from UniProt and GenBank, when a previous retrieval and/or addition of the data to the database fails

• Improved default name of cache dirs and subdirs

• Unit tests: Started rewrite of unit tests to match the new program architecture

• Documentation: Updating the documentation to include the new flags/options, and adding new tutorials for rautomating the retrieval if data from UniProt, GenBank and PDB

Full Changelog: https://github.com/HobnobMancer/cazy_webscraper/compare/v2.0.3...v2.0.5