There is a newer version of the record available.

Published January 17, 2022 | Version v0.13.15
Software Open

PartSeg - segmentation and reconstruction tool for 3D microscopy images

Authors/Creators

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Institute of Informatics, University of Warsaw, Warsaw, Poland
  • 2. Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
  • 3. Institute of Informatics, University of Warsaw, Warsaw, Poland

Contributors

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

Description

0.13.15 Bug Fixes
  • Using translation instead of translation_grid for shifting layers. (#474)
  • Bugs in napari plugins (#478)
  • Missing mask when using roi extraction from napari (#479)
  • Fix segmentation fault on macos machines (#487)
  • Fixes for napari 0.4.13 (#506)
Documentation
  • Create 0.13.15 release (#511)
  • Add categories and preview page workflow for the napari hub (#489)
Features
  • Assign properties to mask layer in napari measurement widget (#480)
Build
  • Bump qtpy from 1.11.3 to 2.0.0 in /requirements (#498)
  • Bump pydantic from 1.8.2 to 1.9.0 in /requirements (#496)
  • Bump sentry-sdk from 1.5.1 to 1.5.2 in /requirements (#497)
  • Bump sphinx from 4.3.1 to 4.3.2 in /requirements (#500)
  • Bump pyinstaller from 4.7 to 4.8 in /requirements (#502)
  • Bump pillow from 8.4.0 to 9.0.0 in /requirements (#501)
  • Bump requests from 2.26.0 to 2.27.1 in /requirements (#495)
  • Bump numpy from 1.21.4 to 1.22.0 in /requirements (#499)
  • Bump numpy from 1.22.0 to 1.22.1 in /requirements (#509)
  • Bump sphinx from 4.3.2 to 4.4.0 in /requirements (#510)
Changes:
  • 1c83fb70020b2bbf875cc44aa50d50c716fa69ab Create 0.13.15 release (#511)
  • 637f9be5d3c5d35ca71fa99441f7b7833e6506f8 fix: Fixes for napari 0.4.13 (#506)
  • 7413e5c60e779a7ae81cbfb061459d4081ce1af5 build(deps): bump sphinx from 4.3.2 to 4.4.0 in /requirements (#510)
  • 23d35c30c41e8ca23ed7b8f6b728ea104edfe1d2 build(deps): bump numpy from 1.22.0 to 1.22.1 in /requirements (#509)
  • a1384a443432a23f1be12e05b9ae56d2b9d84504 Update windows version from 2016 to 2019 in azure pipelines (#508)
  • 62450afda46be06fab19dad459c275ce292d3e2d Force utf-8 usage for encoding files (#504)
  • b042ad9c51effc7cf46ea47c37cfdd7d4cd93bcf doc: Add categories and preview page workflow for the napari hub (#489)
  • a50e41def9df9a57efe3d4d89375032dd04329aa [pre-commit.ci] pre-commit autoupdate (#492)
  • 67efa3eefcdda7b98ab5ec92c5c8800a82461c6e build(deps): bump numpy from 1.21.4 to 1.22.0 in /requirements (#499)

  • 9b773135949a9fa4a6cc0c04619cb8eebd0c96cb build(deps): bump requests from 2.26.0 to 2.27.1 in /requirements (#495) <details><summary><b>See More</b></summary>

  • 18dd8eccd814edd41f89d894c43d85bf55c49aac build(deps): bump pillow from 8.4.0 to 9.0.0 in /requirements (#501)

  • ca9908f5d21189fc9b843076be433adcc8e4c1fa build(deps): bump pyinstaller from 4.7 to 4.8 in /requirements (#502)
  • a00599e70d81e2e6267dffcb5fa9c1213b987a71 build(deps): bump sphinx from 4.3.1 to 4.3.2 in /requirements (#500)
  • 625300870e39639a9a7b614a9feb223ed5917c55 build(deps): bump sentry-sdk from 1.5.1 to 1.5.2 in /requirements (#497)
  • 9aeefe29eb6c4acfe6f7cd7337c4b3f4b417e8c7 build(deps): bump pydantic from 1.8.2 to 1.9.0 in /requirements (#496)
  • 6da4d193cb9c11a71e4cb9ac2594277e80d24129 build(deps): bump qtpy from 1.11.3 to 2.0.0 in /requirements (#498)
  • 00594df54901500c4f19632a464abd15ba301e94 dependabot fix part 2
  • cf5ff33cd01da351bbd7b3c6b193905b29117063 Fix dependabot configuration (#494)
  • 4451f4ce2a5e2861d90a69c0977354b19da6b2ce [pre-commit.ci] pre-commit autoupdate (#490)
  • a4edff1b9fbe55eb7f5e1fc8b5b3f8e730b35caf fix: Fix segmentation fault on macos machines (#487)
  • 8c658bd56f5fb97e5f0dd64f678bcb3d8502e4fb Update to actions/checkout@v2 in workflows (#486)
  • 83e364c44c03f4f78e5ea6f058eb385c11afecdb Update version of libraries in bundle (#482)
  • 603758f1253f3799c415232ba892cbf358474c54 feat: Assign properties to mask layer in napari measurement widget (#480)
  • 4f5eda282d31fc78e274e59f5ea48221b80a7655 fix: missing mask when using roi extraction from napari (#479)
  • d14b136e5eb1a6e5f15d3278bf5817217e059772 fix: Bugs in napari plugins (#478)
  • 744893e10e712726175962d73c43618731f1e47a fix mask marking and component highlight (#477)
  • 354390a73d39731f8edcf770b96821702480d13f [pre-commit.ci] pre-commit autoupdate (#476)
  • 3698eeb643a7ed18248a5d9f88e028703123f4b8 fix PARTSEG-FE (#475)
  • 0ef2d1a5e705774d26ad3d26f1600cf80014facb [pre-commit.ci] pre-commit autoupdate (#461)
  • af171a13020fa9715b44c5600716043eca694767 fix: Using translation instead of translation_grid for shifting layers. (#474)

This list of changes was auto generated.</details>

Files

4DNucleome/PartSeg-v0.13.15.zip

Files (7.2 MB)

Name Size Download all
md5:c9a31240663d7b7b48e31dc2c64091ff
7.2 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/4DNucleome/PartSeg/tree/v0.13.15 (URL)