Published January 17, 2022
| Version 3.1.20220116183622
Software
Open
common-workflow-language/cwltool: 3.1.20220116183622
Authors/Creators
- Peter Amstutz1
- Michael R. Crusoe2
- Farah Zaib Khan3
- Stian Soiland-Reyes4
- Manvendra Singh
- Kapil kumar5
- John Chilton6
- Thomas Hickman7
- boysha
- Rupert Nash8
- Tomoya Tanjo9
- ash
- Michael Kotliar10
- Brad Chapman11
- Andrey Kartashov
- Guillermo Carrasco12
- Dan Leehr13
- Nebojsa Tijanic
- Joshua C. Randall14
- Miguel Boland
- bogdang989
- Chuck McCallum
- Hervé Ménager15
- Pau Ruiz Safont16
- Denis Yuen17
- Gijs Molenaar18
- James J Porter19
- Alejandro Barrera20
- Giacomo Tagliabue21
- 1. @CuriiHQ @arvados
- 2. @common-workflow-language
- 3. The University of Melbourne
- 4. eScience lab, University of Manchester
- 5. @common-workflow-language @NITDTERRATECHNICA
- 6. Penn State University
- 7. @Genomicsplc
- 8. University of Edinburgh
- 9. Bioinformation and DDBJ Center
- 10. Cincinnati Children's Hospital Medical Center
- 11. Ginkgo Bioworks
- 12. @iZettle
- 13. IBM
- 14. Genomics plc
- 15. Institut Pasteur
- 16. Citrix
- 17. @OICR_news
- 18. Pythonic.nl
- 19. Recurse Center
- 20. Duke University
- 21. 4Catalyzer
Description
New Features
- Initial support CUDARequirement extension by @tetron in https://github.com/common-workflow-language/cwltool/pull/1581
- allow additional pathname characters in strict mode by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1579
- _terminate_processes for non-docker processes, like nodejs by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1577
- Add helpful error message when a program is terminated by a (Unix) signal, such as a segfault by @gmloose in https://github.com/common-workflow-language/cwltool/pull/1569
- expand stdin shortcut even when an ID is preset by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1592
- Fix --print-targets to pass inherited reqs. by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1580
- Protect ruamel from blank comment strings when making templates by @leipzig in https://github.com/common-workflow-language/cwltool/pull/1390
- WSL2 clarification by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1567
- remove unnecessary encodes by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1575
- add better string representation for Process objects by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1571
- Remove noisy exception when the monitored process exits quickly by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1584
- Update how to setup pip environment by @manabuishii in https://github.com/common-workflow-language/cwltool/pull/1017
- remove an Any type hint by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1587
- GA: simplify pip caching by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1589
- Bump mypy from 0.910 to 0.920 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1574
- Update rdflib requirement from <6.1,>=4.2.2 to >=4.2.2,<6.2 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1576
- Bump mypy from 0.920 to 0.921 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1578
- Bump mypy from 0.921 to 0.930 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1582
- Update ruamel-yaml requirement from <0.17.18,>=0.15 to >=0.15,<0.17.20 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1583
- Update ruamel-yaml requirement from <0.17.20,>=0.15 to >=0.15,<0.17.21 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1585
- Bump mypy from 0.930 to 0.931 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1588
- @gmloose made their first contribution in https://github.com/common-workflow-language/cwltool/pull/1569
- @manabuishii made their first contribution in https://github.com/common-workflow-language/cwltool/pull/1017
- @leipzig made their first contribution in https://github.com/common-workflow-language/cwltool/pull/1390
Full Changelog: https://github.com/common-workflow-language/cwltool/compare/3.1.20211107152837...3.1.20220116183622
Files
common-workflow-language/cwltool-3.1.20220116183622.zip
Files
(3.3 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/common-workflow-language/cwltool/tree/3.1.20220116183622 (URL)