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Published July 22, 2016 | Version v0.8
Software Open

ngl v0.8

Authors/Creators

  • 1. UCSD, RCSB PDB
  • 2. Charité Berlin
  • 3. UC San Diego

Description

Added
  • gulp build scripts
  • mmtf v0.2 support
  • support for rendering double/triple bonds, enable via multipleBond Representation parameter (@fredludlow, @arose)
  • stage.clicked signal (renamed from .onPicking)
  • stage.hovered signal
  • parsing of "chem comp" cif files
  • experimental "axes" representation showing the principal axes of an atom selection
  • added cone, arrow & ellipsoid buffers
  • added Shape class as a simple way to add custom shapes to the scene
Changed
  • reorganized everything to use es6 modules
  • read bondOrder from 'pdbx_value_order' in mmcif files
  • interpret 'CONECT 1529 1528 1528' as double bond in pdb files
  • side Buffer/Representation parameter changed: THREE.FrontSide => "front", THREE.BackSide => "back", THREE.DoubleSide => "double"
  • support for negative resno values in selections: "-5:A", "-12--8", "-12-0"
  • use chemical component type (available in mmtf) for determining molecule type
  • .get/setOrientation return/argument changed
  • enable SDF font as the default TextBuffer class only on Chrome
  • support for building using three-jsnext
  • renamed radiusSegments parameter to radialSegments
  • WebWorkers (for building surfaces) no longer need to load the main script file
  • NGL.GET renamed to NGL.getQuery
Removed
  • python-based build scripts
  • closure-compiler
  • stage.signals.onPicking (renamed to .clicked)
  • stage.signals.atom/bond/volume/nothingPicked, use .clicked instead
  • NGL.mainScriptFilePath no longer needed
  • NGL.useWorker, use "useWorker" representation parameter

Files

ngl-v0.8.zip

Files (255.1 MB)

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md5:92ed8c76588158439a8cae51ab17453a
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Additional details

Related works

Is supplement to
https://github.com/arose/ngl/tree/v0.8 (URL)