AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Published January 11, 2022 | Version v0.11.23

Software Open

Features:

Added overload for Model::setParameterScale with vector<int> by @dilpath in https://github.com/AMICI-dev/AMICI/pull/1614
Removed assert_fun argument from gradient checking, improve output by @dweindl, @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1609
Added get_expressions_as_dataframe by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1621
Added id field to ExpData and ReturnData by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1622
Included condition id in dataframes by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1623

Fixes:

C++: Fixed SUNMatrixWrapper ctor for size 0 matrices by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1608
Python: Handle TemporaryDirectory cleanup failures on Windows by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1617
Python: pysb.Model.initial_conditions throws a DeprecationWarning by @PaulJonasJost in https://github.com/AMICI-dev/AMICI/pull/1620
Fixed wrong array size in warnings by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1624

NOTE: AMICI 0.11.23 requires numpy<1.22.0

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.11.22...v0.11.23

Notes

If you use this software, please cite both the article from preferred-citation and the software itself.

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