Published January 6, 2022
| Version 0.0.11
Software
Open
neurostuff/NiMARE: 0.0.11
Authors/Creators
-
Salo, Taylor1
-
Yarkoni, Tal2
-
Nichols, Thomas E.3
-
Poline, Jean-Baptiste4
-
Kent, James D.5
-
Gorgolewski, Krzysztof J.6
-
Glerean, Enrico7
-
Bottenhorn, Katherine L.1
-
Bilgel, Murat8
-
Wright, Jessey6
-
Reeders, Puck1
-
Kimbler, Adam1
-
Nielson, Dylan N.9
-
Yanes, Julio A.10
-
Pérez, Alexandre11
-
Oudyk, Kendra M.11
-
Jarecka, Dorota12
-
Enge, Alexander13
-
Peraza, Julio A.1
-
Laird, Angela R.1
- 1. Florida International University
- 2. University of Texas at Austin
- 3. Big Data Institute, University of Oxford
- 4. Neurology and Neurosurgery, McGill University
- 5. Neuroscience Program, University of Iowa
- 6. Department of Psychology, Stanford University
- 7. Department of Neuroscience and Biomedical Engineering, Aalto University
- 8. National Institute on Aging
- 9. National Institute of Mental Health
- 10. Auburn University
- 11. Montreal Neurological Institute, McGill University
- 12. MIT
- 13. Max Planck Institute for Human Cognitive and Brain Sciences
Description
This release continues fixes and improvements we've made for the NiMARE manuscript. Additionally, we are starting to dramatically refactor how NiMARE stores meta-analytic data, with the end goals of (1) synchronizing NiMARE data storage with the NIMADS standard, (2) internally representing data and results in a manner that is compatible with NeuroStore, and (3) implementing a meta-analysis model specification that can be employed with both NiMARE and Neurosynth 2.0.
<!-- Release notes generated using configuration in .github/release.yml at main --> What's Changed 🛠 Breaking Changes- Replace Nilearn templates with ones stored in resources folder and unset maximum Nilearn version by @tsalo in https://github.com/neurostuff/NiMARE/pull/621
- Implement cluster mass-based cluster-level Monte Carlo correction for CBMA algorithms by @tsalo in https://github.com/neurostuff/NiMARE/pull/609
- Use scikit-learn for LDAModel by @tsalo in https://github.com/neurostuff/NiMARE/pull/607 ### 🎉 Exciting New Features
- New diagnostics module, with post-meta-analysis Jackknife method by @tsalo in https://github.com/neurostuff/NiMARE/pull/592 ### 👎 Deprecations
- Flag peaks2maps for removal in 0.0.13/0.1.0 by @tsalo in https://github.com/neurostuff/NiMARE/pull/616 ### 🐛 Bug Fixes
- Only download group maps when creating dataset and raise error if no images are found for a contrast by @jdkent in https://github.com/neurostuff/NiMARE/pull/580
- Force maskers to be array images instead of proxy images by @tsalo in https://github.com/neurostuff/NiMARE/pull/588 ### Other Changes
- Add test steps and explicit support for Python 3.9 by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/578
- Add major classes/functions to parent namespaces by @tsalo in https://github.com/neurostuff/NiMARE/pull/600
- Make non-user-facing utility functions semi-private and improve docs by @tsalo in https://github.com/neurostuff/NiMARE/pull/604
- Move files used by examples from tests to resources by @tsalo in https://github.com/neurostuff/NiMARE/pull/605
- Improve documentation of CBMA and add methods pages by @tsalo in https://github.com/neurostuff/NiMARE/pull/610
- Use tmpdir for memmap files instead of the NiMARE data directory by @tsalo in https://github.com/neurostuff/NiMARE/pull/599
Full Changelog: https://github.com/neurostuff/NiMARE/compare/0.0.10...0.0.11
Files
neurostuff/NiMARE-0.0.11.zip
Files
(15.9 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:da4dc86fbec2ab6bf268bf2996be73de
|
15.9 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/neurostuff/NiMARE/tree/0.0.11 (URL)