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Published July 19, 2016 | Version v1.8.0
Software Open

viral-ngs: v1.8.0

Authors/Creators

  • 1. Broad Institute
  • 2. Broad Institute of MIT and Harvard
  • 3. MIT
  • 4. DNAnexus

Description

New features:
  • reports.py plot_coverage — creates a coverage plot for a mapped .bam file. Multiple chart styles are supported, and data can be drawn as a line, filled line, or point series
  • reports.py align_and_plot_coverage — performs a quick BWA alignment between an unmapped bam file and a reference .fasta file, and then creates a coverage plot via reports.py plot_coverage.
Example chart:

Files

viral-ngs-v1.8.0.zip

Files (45.9 MB)

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md5:1250fe8b954547cf1b96eb30932ff907
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Additional details

Related works

Is supplement to
https://github.com/broadinstitute/viral-ngs/tree/v1.8.0 (URL)