Published December 7, 2007
| Version v1
Journal article
Open
Higher-level phylogeny of Asian and American coralsnakes, their placement within the Elapidae (Squamata), and the systematic affinities of the enigmatic Asian coralsnake Hemibungarus calligaster (Wiegmann, 1834)
Authors/Creators
Description
Castoe, Todd A., Smith, Eric N., Brown, Rafe M., Parkinson, Christopher L. (2007): Higher-level phylogeny of Asian and American coralsnakes, their placement within the Elapidae (Squamata), and the systematic affinities of the enigmatic Asian coralsnake Hemibungarus calligaster (Wiegmann, 1834). Zoological Journal of the Linnean Society 151 (4): 809-831, DOI: 10.1111/j.1096-3642.2007.00350.x, URL: https://academic.oup.com/zoolinnean/article-lookup/doi/10.1111/j.1096-3642.2007.00350.x
Files
source.pdf
Files
(966.6 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:eb8916844c30e6c0b4dd76633f551b37
|
966.6 kB | Preview Download |
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FF89FF844C30FFC0FFDD76633F551B37
- URL
- http://publication.plazi.org/id/FF89FF844C30FFC0FFDD76633F551B37
References
- Akaike H. 1973. Information theory and an extension of the maximum likelihood principle. In: Second International Symposium on Information Theory. Budapest: Akademiai Kiado, 673-681.
- Akaike H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716- 723.
- Alfaro ME, Zoller S, Lutzoni F. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20: 255-266.
- Arevalo ES, Davis SK, Sites JW Jr. 1994. Mitochondrial DNA sequence divergence and phylogenetic relationships of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Systematic Biology 43: 387-418.
- Bogert CM. 1940. Herpetological results of the Vernay Angola Expedition: with notes on African reptiles in other collections. Part 1, Snakes, including an arrangement of African Colubridae. Bulletin of the American Museum of Natural History 77: 1-107.
- Brandley MC, Schmitz A, Reeder TW. 2005. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology 54: 373- 390.
- Cadle JE, Gorman GC. 1981. Albumin immunological evidence and relationships of sea snakes. Journal of Herpetology 15: 329-334.
- Campbell JA, Lamar WW. 1989. The venomous reptiles of Latin America. Ithaca: Cornell University Press.
- Campbell JA, Lamar WW. 2004. The venomous reptiles of the Western Hemisphere. Ithaca: Cornell University Press.
- Castoe TA, Doan TM, Parkinson CL. 2004. Data partitions and complex models in Bayesian analysis: the phylogeny of gymnophthalmid lizards. Systematic Biology 53: 448-469.
- Castoe TA, Parkinson CL. 2006. Bayesian mixed models and the phylogeny of pitvipers (Serpentes: Viperidae). Molecular Phylogenetics and Evolution 39: 91-110.
- Castoe TA, Sasa M, Parkinson CL. 2005. Modeling nucleotide evolution at the mesoscale: the phylogeny of the Neotropical pitvipers of the Porthidium group (Viperidae: Crotalinae). Molecular Phylogenetics and Evolution 37: 881-898.
- Cope ED. 1895. The classification of the ophidia. Transactions of the American Philosophical Society 18: 186-219.
- Dowling HG, Savage JM. 1960. A guide to the snake hemipenis: a survey of basic structure and systematic characteristics. Zoologica 45: 17-30.
- Erixon SP, Britton B, Oxelman B. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biology 52: 665-673.
- Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
- Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
- Gelman A, Rubin DB. 1992. Inference from iterative simulation using multiple sequences (with discussion). Statistical Science 7: 457-511.
- Golay P, Smith HM, Broadley DG, Dixon JR, McCarthy C, Rage J-C, Schatti B, Toriba M. 1993. Endoglyphs and other major venomous snakes of the world: a checklist. Geneva: Azemiops.
- Gray JE. 1832-1835. Illustrations of Indian Zoology; Chiefly Selected from the Collection of Major-General Hardwicke, Vol. II. (parts XI-XX). London: Adolphus Richter and Co. & Parbury, Allen, and Co.
- Gutberlet RL Jr, Harvey MB. 2004. The evolution of New World venomous snakes. In: Campbell JA, Lamar WW, eds. The venomous reptiles of the Western Hemisphere. Ithaca: Cornell University Press, 634-682.
- Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 21: 160-174.
- Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
- Huelsenbeck JP. 1997. Is the Felsenstein zone a fly trap? Systematic Biology 46: 69-74.
- Huelsenbeck JP, Larget B, Miller R, Ronquist F. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 51: 673-688.
- Huelsenbeck JP, Rannala B. 2004. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Systematic Biology 53: 904-913.
- Kass RE, Rafterty AE. 1995. Bayes factors. Journal of the American Statistical Association 90: 773-795.
- Keogh JS. 1998. Molecular phylogeny of elapid snakes and a consideration of their biogeographic history. Biological Journal of the Linnean Society 63: 177-203.
- Keogh JS. 1999. Evolutionary implications of hemipenial morphology in the terrestrial Australian elapid snakes. Zoological Journal of the Linnean Society 125: 239-278.
- Keogh JS, Scott IAW, Scanlon JD. 2000. Molecular phylogeny of viviparous Australian elapid snakes: affinities of Echiopsis atriceps (Storr, 1980) and Drysdalia coronatus (Schlegel, 1837), with description of a new genus. Journal of Zoology, London 252: 315-326.
- Keogh JS, Shine R, Donnellan SC. 1998. Phylogenetic relationships of terrestrial Australo-papuan elapid snakes (subfamily Hydrophiinae) based on Cytochrome b and 16s rRNA sequences. Molecular Phylogenetics and Evolution 10: 67-81.
- Lawson R, Slowinski JB, Crother BI, Burbrink FT. 2005. Phylogeny of the Colubroidea (Serpentes): new evidence from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 37: 581-601.
- Lemmon AR, Moriarty EC. 2004. The importance of proper model assumption in Bayesian phylogenetics. Systematic Biology 53: 265-277.
- Leviton AE. 1964. Contributions to a review of Philippine snakes III. The genera Maticora and Calliophis. Philippine Journal of Science 92: 523-550.
- Leviton AE, Gibbs RH Jr, Heal E, Dawson CE. 1985. Standards in herpetology and ichthyology: part I. Standard symbolic codes for institutional resource collections in herpetology and ichthyology. Copeia 1985: 802-832.
- McDowell SB. 1967. Aspidomorphus, a genus of New Guinea snakes in the family Elapidae, with notes on related genera. Journal of Zoology, London 151: 497-543.
- McDowell SB. 1969. Toxicocalamus, a New Guinea genus of snakes of the family elapidae. Journal of Zoology, London 159: 443-511.
- McDowell SB. 1970. On the status and relationships of the Solomon Island elapid snakes. Journal of Zoology, London 161: 145-190.
- McDowell SB. 1986. The architecture of the corner of the mouth of colubroid snakes. Journal of Herpetology 20: 353- 407.
- McDowell SB. 1987. Systematics. In: Seigel RA, Collins JT, Novak SS, eds. Snakes: ecology and evolutionary biology. New York: MacMillan, 3-50.
- Mengden GA. 1985. Australian elapid phylogeny: a summary of the chromosomal and electrophoretic data. In: Grigg G, Shine R, Ehmann H, eds. Biology of Australian frogs and reptiles. Sydney: Surrey Beatty and Sons, 185-192.
- Myers CW, Cadle JE. 2003. On the snake hemipenis, with notes on Psomophis and techniques of eversion: a response to Dowling. Herpetological Review 34: 295-302.
- Nicholas KB, Nicholas HB Jr. 1997. GeneDoc: a tool for editing and annotating multiple sequence alignments. Available at http://www.cris.com/~Ketchup/genedoc.shtml
- Nylander JAA. 2004. MrModeltest v2. Program distributed by the author. Uppsala: Evolutionary Biology Centre, Uppsala University.
- Nylander JAA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey JL. 2004. Bayesian phylogenetic analysis of combined data. Systematic Biology 53: 47-67.
- Parkinson CL, Campbell JA, Chippindale PT. 2002. Multigene phylogenetic analyses of pitvipers; with comments on the biogeographical history of the group. In: Schuett GW, Hoggren M, Douglas ME, Greene HW, eds. Biology of the vipers. Salt Lake City: Eagle Mountain Publishing, 93-110.
- Peters WCH. 1862. Praparate vor zur craniologischen Unterscheidung der Schlangengattung Elaps und machte eine Mittheilung uber eine neue Art der Gattung Simotes, S. semicinctus. Monastsberichte der Deutschen Akademie der Wissenschaft zu Berlin 1862: 635-638.
- Posada D, Buckley TR. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology 53: 793-808.
- Rambout A, Drummond AJ. 2003. Tracer, Version 1.0.1. Available at http://evolve.zoo.ox.ac.uk/
- Rannala B. 2002. Identifiability of parameters in MCMC Bayesian inference of phylogeny. Systematic Biology 51: 754-760.
- Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
- Roze JA. 1996. Coral snakes of the Americas: biology, identification, and venoms. Malabar, FL: Kreiger.
- Roze JA, Bernal-Carlo A. 1987. Las serpientes corales venenosas del genero Leptomicrurus (Serpentes, Elapidae) de Suramerica con description de una nueva subespecie. Bolletino del Museo Regionale di Scienze di Torino 5: 573- 608.
- Sakamoto Y, Ishiguro M, Kitagawa G. 1986. Akaike information criterion statistics. New York: Springer.
- Savage JM. 2002. The amphibians and reptiles of Costa Rica. Chicago: The University of Chicago Press.
- Scanlon JD, Lee MSY. 2004. Phylogeny of Australasian venomous snakes (Colubroidea, Elapidae, Hydrophiinae) based on phenotypic and molecular evidence. Zoologica Scripta 33: 335-366.
- Schwaner TD, Baverstock PR, Dessauer HC, Mengden GA. 1985. Immunological evidence for the phylogenetic relationships of Australian elapid snakes. In: Grigg G, Shine R, Ehmann H, eds. Biology of Australian frogs and reptiles. Sydney: Surrey Beatty and Sons, 177- 184.
- Slowinski JB. 1994. A phylogenetic analysis of Bungarus (Elapidae) based on morphological characters. Journal of Herpetology 28: 440-446.
- Slowinski JB. 1995. A phylogenetic analysis of the New World coralsnakes (Elapidae: Leptomicrurus, Micruroides, and Micrurus) based on allozymatic and morphological characters. Journal of Herpetology 29: 325-338.
- Slowinski JB, Boundy J, Lawson R. 2001. The phylogenetic relationships of Asian coral snakes (Elapidae: Calliophis and Maticora) based on morphological and molecular evidence. Herpetologica 57: 233-245.
- Slowinski JB, Keogh JS. 2000. Phylogenetic relationships of elapid snakes based on cytochrome b mtDNA sequences. Molecular Phylogenetics and Evolution 15: 157- 164.
- Slowinski JB, Knight A, Rooney AP. 1997. Inferring species trees from gene trees: a phylogenetic analysis of the Elapidae (Serpentes) based on the amino acid sequences of venom proteins. Molecular Phylogenetics and Evolution 8: 349-362.
- Slowinski JB, Lawson R. 2002. Snake phylogeny: evidence from nuclear and mitochondrial genes. Molecular Phylogenetics and Evolution 24: 194-202.
- Swofford DL. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4 0b10. Sunderland, MA: Sinauer Associates.
- Tavare S. 1996. Some probabilistic and statistical problems on the analysis of DNA sequences. In: Miura RM, ed. Some mathematical questions in biology-DNA sequence analysis. Providence, RI: American Math Society, 57-86.
- Toriba M. 1993. A karyotypic and morphological comparison of Calliophis japonicus with coral snakes. Japan Journal of Herpetology 15: 91-92.
- Vogel G. 2006. Venomous snakes of Asia, Giftschlangen Asiens. Frankfurt am Main: Edition Chimaira.
- Wiegmann AFA Jr. 1834. Beitrage zur Zoologie, gesammelt auf einer Reise um die Erd von F. J. F. Meyen, M. D., A. D. N. Siebente Abhandlung. Amphibien Nova Acta Leopoldina 17: 185-268.
- Wiens JJ. 1998. Combining data sets with different phylogenetic histories. Systematic Biology 47: 568-581.
- Yang Z. 1996. Maximum likelihood models for combined analyses of multiple sequence data. Journal of Molecular Evolution 42: 587-596.
- Zaher H, Prudente ALC. 2003. Hemipenes of Siphlophis (Serpentes, Xenodontinae) and techniques of hemipenial preparation in snakes: a response to Dowling. Herpetological Review 34: 302-307.