There is a newer version of the record available.

Published November 30, 2021 | Version 2.4.1
Software Open

nf-core/eager: [2.4.1] - Wangen (Patch) - 2021-11-30

Authors/Creators

  • 1. HKI Jena, MPI-EVA Leipzig
  • 2. Boehringer Ingelheim
  • 3. Max Planck Institute for Evolutionary Anthropology
  • 4. Max Planck institute for the Science of Human Evolution
  • 5. Griffith University
  • 6. Max Planck Institute for the Science of Human History
  • 7. The Francis Crick Institute
  • 8. @SciLifeLab | Karolinska Institutet
  • 9. Seqera Labs and @nextflow-io
  • 10. Science for Life Laboratory
  • 11. @qbicsoftware
  • 12. Seqera Labs
  • 13. @czbiohub
  • 14. MPI-EVA

Description

[2.4.1] - 2021-11-30 Added
  • #805 Changes to bam_trim options to allow flexible trimming by library strandedness (in addition to UDG treatment). (@TCLamnidis)
  • #808 Retain read group information across bam merges. Sample set to sample name (rather than library name) in bwa output 'RG' readgroup tag. (@TCLamnidis)
  • Map and base quality filters prior to genotyping with pileupcaller can now be specified. (@TCLamnidis)
  • #774 Added support for multi-threaded Bowtie2 build reference genome indexing (@jfy133)
  • #804 Improved output documentation description to add how 'cluster factor' is calculated (thanks to @meganemichel)
Fixed
  • #803 Fixed mistake in metro-map diagram (samtools index is now correctly samtools faidx) (@jfy133)
Dependencies Deprecated

Files

nf-core/eager-2.4.1.zip

Files (17.9 MB)

Name Size Download all
md5:9679e111284e82e8ad486c08abd4ed5e
17.9 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/nf-core/eager/tree/2.4.1 (URL)